F13A1 (coagulation factor XIII A chain) - Rat Genome Database

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Gene: F13A1 (coagulation factor XIII A chain) Pan paniscus
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Symbol: F13A1
Name: coagulation factor XIII A chain
RGD ID: 11736569
Description: ENCODES a protein that exhibits metal ion binding (inferred); protein-glutamine gamma-glutamyltransferase activity (inferred); INVOLVED IN blood coagulation (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); arteriosclerosis (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); FOUND IN collagen-containing extracellular matrix (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2520,772,261 - 20,960,421 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1616,776,810 - 16,955,131 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v065,978,505 - 6,156,705 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.166,159,012 - 6,337,000 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl66,157,926 - 6,513,961 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
F13A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2520,772,261 - 20,960,421 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1616,776,810 - 16,955,131 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v065,978,505 - 6,156,705 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.166,159,012 - 6,337,000 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl66,157,926 - 6,513,961 (-)Ensemblpanpan1.1panPan2
F13A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3866,144,084 - 6,320,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl66,144,084 - 6,321,013 (-)EnsemblGRCh38hg38GRCh38
GRCh3766,144,317 - 6,320,895 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3666,089,310 - 6,265,923 (-)NCBINCBI36Build 36hg18NCBI36
Build 3466,089,316 - 6,265,901NCBI
Celera67,372,733 - 7,550,578 (-)NCBICelera
Cytogenetic Map6p25.1NCBI
HuRef66,020,217 - 6,197,010 (-)NCBIHuRef
CHM1_166,146,854 - 6,323,031 (-)NCBICHM1_1
T2T-CHM13v2.066,013,258 - 6,189,597 (-)NCBIT2T-CHM13v2.0
F13a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391337,051,150 - 37,234,220 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1337,051,152 - 37,234,220 (-)EnsemblGRCm39 Ensembl
GRCm381336,867,178 - 37,050,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1336,867,178 - 37,050,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv371336,959,047 - 37,142,113 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361336,874,653 - 37,056,670 (-)NCBIMGSCv36mm8
Celera1337,983,710 - 38,163,470 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.44NCBI
F13a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81728,021,197 - 28,197,960 (+)NCBIGRCr8
mRatBN7.21727,815,723 - 27,992,494 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1727,815,702 - 27,992,700 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1727,681,035 - 27,857,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01729,284,581 - 29,461,269 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01727,645,506 - 27,822,130 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01728,504,650 - 28,680,015 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1728,504,623 - 28,680,362 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01730,406,396 - 30,581,441 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41734,093,525 - 34,270,498 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11734,096,401 - 34,272,682 (+)NCBI
Celera1727,443,244 - 27,619,724 (+)NCBICelera
Cytogenetic Map17p12NCBI
F13a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554657,443,166 - 7,617,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554657,444,118 - 7,617,366 (+)NCBIChiLan1.0ChiLan1.0
F13A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,186,750 - 6,347,522 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,187,235 - 6,349,773 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha356,191,814 - 6,354,808 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0356,267,724 - 6,430,557 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl356,267,724 - 6,428,774 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1356,122,455 - 6,285,137 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0356,148,410 - 6,311,467 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,481,872 - 7,644,350 (-)NCBIUU_Cfam_GSD_1.0
F13a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494617,930,084 - 18,091,733 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365346,199,066 - 6,361,476 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365346,199,066 - 6,360,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F13A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl73,751,292 - 3,900,762 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.173,751,290 - 3,900,797 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.273,952,957 - 4,102,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
F13A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11765,885,498 - 66,040,026 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1765,885,658 - 66,040,040 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660446,090,570 - 6,385,150 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
F13a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475619,103,327 - 19,259,964 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475619,103,064 - 19,259,632 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000002447   ⟹   ENSPPAP00000000565
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl66,157,926 - 6,513,961 (-)Ensembl
RefSeq Acc Id: XM_003806722   ⟹   XP_003806770
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2520,772,261 - 20,960,418 (-)NCBI
NHGRI_mPanPan1616,776,810 - 16,955,131 (-)NCBI
Mhudiblu_PPA_v065,978,505 - 6,156,705 (-)NCBI
PanPan1.166,159,012 - 6,337,000 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063605135   ⟹   XP_063461205
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2520,772,261 - 20,958,585 (-)NCBI
RefSeq Acc Id: XM_063605136   ⟹   XP_063461206
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2520,794,817 - 20,960,421 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003806770 (Get FASTA)   NCBI Sequence Viewer  
  XP_063461205 (Get FASTA)   NCBI Sequence Viewer  
  XP_063461206 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000565
  ENSPPAP00000000565.1
RefSeq Acc Id: XP_003806770   ⟸   XM_003806722
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZAR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000000565   ⟸   ENSPPAT00000002447
RefSeq Acc Id: XP_063461205   ⟸   XM_063605135
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063461206   ⟸   XM_063605136
- Peptide Label: isoform X2
Protein Domains
Transglutaminase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000002226 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000002447.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.90.260.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Transglutaminase-like UniProtKB/TrEMBL
  Transglutaminase-like_sf UniProtKB/TrEMBL
  Transglutaminase_animal UniProtKB/TrEMBL
  Transglutaminase_AS UniProtKB/TrEMBL
  Transglutaminase_C UniProtKB/TrEMBL
  Transglutaminase_C_sf UniProtKB/TrEMBL
  Transglutaminase_N UniProtKB/TrEMBL
NCBI Gene F13A1 ENTREZGENE
PANTHER PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE UniProtKB/TrEMBL
  PTHR11590:SF42 UniProtKB/TrEMBL
Pfam Transglut_C UniProtKB/TrEMBL
  Transglut_core UniProtKB/TrEMBL
  Transglut_N UniProtKB/TrEMBL
PIRSF TGM_EBP42 UniProtKB/TrEMBL
PROSITE TRANSGLUTAMINASES UniProtKB/TrEMBL
SMART TGc UniProtKB/TrEMBL
Superfamily-SCOP SSF49309 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A2R8ZAR5 ENTREZGENE, UniProtKB/TrEMBL