Trdc (T cell receptor delta, constant region) - Rat Genome Database

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Gene: Trdc (T cell receptor delta, constant region) Mus musculus
Analyze
Symbol: Trdc
Name: T cell receptor delta, constant region
RGD ID: 11340121
MGI Page MGI
Description: Located in external side of plasma membrane. Orthologous to human TRDC (T cell receptor delta constant).
Type: gene (Ensembl: TR_C_gene)
RefSeq Status: VALIDATED
Previously known as: Tcrd-; Tcrd-C
RGD Orthologs
Human
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,380,308 - 54,383,565 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,380,308 - 54,386,325 (+)EnsemblGRCm39 Ensembl
GRCm381454,142,851 - 54,146,108 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,142,851 - 54,148,868 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,762,526 - 54,765,783 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1451,873,047 - 51,940,029 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:1371498   PMID:2527198   PMID:2564371   PMID:2847872   PMID:3262424   PMID:3263646   PMID:7614980   PMID:8075639   PMID:8082892   PMID:8790395   PMID:9121464   PMID:9317132  
PMID:10792495   PMID:15608191   PMID:16878135   PMID:19830744   PMID:20870939   PMID:21108461   PMID:21270406   PMID:21637854   PMID:21873635   PMID:22511722   PMID:22770884   PMID:22976954  
PMID:23727932   PMID:24663215   PMID:24801349   PMID:25493651   PMID:25765849   PMID:26147688   PMID:27019327   PMID:27256884   PMID:27569912   PMID:27927968   PMID:28386934   PMID:28942917  
PMID:29248460   PMID:29884699   PMID:30300386   PMID:30455268   PMID:30692259   PMID:31216482   PMID:32213566   PMID:33412104   PMID:35298525   PMID:35613579   PMID:35857588   PMID:36198790  
PMID:36640306   PMID:36804959  


Genomics

Comparative Map Data
Trdc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,380,308 - 54,383,565 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,380,308 - 54,386,325 (+)EnsemblGRCm39 Ensembl
GRCm381454,142,851 - 54,146,108 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,142,851 - 54,148,868 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,762,526 - 54,765,783 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1451,873,047 - 51,940,029 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.66NCBI
TRDC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,462,932 - 22,466,577 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,462,932 - 22,465,787 (+)EnsemblGRCh38hg38GRCh38
GRCh371422,931,924 - 22,935,569 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,001,746 - 22,005,409 (+)NCBINCBI36Build 36hg18NCBI36
Celera142,794,857 - 2,798,520 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,050,215 - 3,053,860 (+)NCBIHuRef
CHM1_11422,930,834 - 22,934,479 (+)NCBICHM1_1
T2T-CHM13v2.01416,660,690 - 16,664,335 (+)NCBIT2T-CHM13v2.0
TRDC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha82,809,458 - 2,816,883 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.082,966,832 - 2,974,256 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl82,858,350 - 2,975,161 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.182,659,610 - 2,667,033 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.082,721,157 - 2,728,566 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.082,983,049 - 2,990,471 (+)NCBIUU_Cfam_GSD_1.0
LOC102160313
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,469,954 - 76,673,728 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1776,554,354 - 76,565,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,787,550 - 81,803,664 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Trdc
96 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000196323   ⟹   ENSMUSP00000142908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1454,380,308 - 54,386,325 (+)Ensembl
GRCm38.p6 Ensembl1454,142,851 - 54,148,868 (+)Ensembl
Protein Sequences
GenBank Protein AAA40401 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000142908.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000142908   ⟸   ENSMUST00000196323
Protein Domains
Immunoglobulin C1-set


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98612 AgrOrtholog
Ensembl Genes ENSMUSG00000104876 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000196323.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
MGD MGI:98612 ENTREZGENE
NCBI Gene Trdc ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  SIGNAL-REGULATORY PROTEIN BETA UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
PhenoGen Trdc PhenoGen
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2JEU3_MOUSE UniProtKB/TrEMBL