Cdh6 (cadherin 6) - Rat Genome Database

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Gene: Cdh6 (cadherin 6) Mus musculus
Analyze
Symbol: Cdh6
Name: cadherin 6
RGD ID: 10320
MGI Page MGI
Description: Predicted to enable beta-catenin binding activity and cadherin binding activity. Involved in synaptic membrane adhesion. Acts upstream of or within Notch signaling pathway. Located in plasma membrane. Is active in glutamatergic synapse. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and sensory organ. Orthologous to human CDH6 (cadherin 6).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: cad; cad6; cadherin-6; K-cadh; K-cadherin; kidney cadherin; MGC129338; MGC129360
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391513,028,785 - 13,176,493 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1513,028,787 - 13,173,761 (-)EnsemblGRCm39 Ensembl
GRCm381513,028,699 - 13,176,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1513,028,701 - 13,173,675 (-)EnsemblGRCm38mm10GRCm38
MGSCv371512,963,955 - 13,103,394 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361512,978,925 - 13,036,602 (-)NCBIMGSCv36mm8
Celera1512,808,206 - 12,945,380 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map156.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(25R)-cholest-5-ene-3beta,26-diol  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
26-hydroxycholesterol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
5-fluorouracil  (ISO)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alendronic acid  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
amosite asbestos  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
butanal  (ISO)
CGP 52608  (ISO)
clofibrate  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dimethylarsinous acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (ISO)
nickel atom  (ISO)
niclosamide  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (EXP)
permethrin  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
progesterone  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
thalidomide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Emx1 and Emx2 cooperate to regulate cortical size, lamination, neuronal differentiation, development of cortical efferents, and thalamocortical pathfinding. Bishop KM, etal., J Comp Neurol 2003 Mar 17;457(4):345-60.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Gene dosage-dependent functions for phosphotyrosine-Grb2 signaling during mammalian tissue morphogenesis. Saxton TM, etal., Curr Biol 2001 May 1;11(9):662-70.
Additional References at PubMed
PMID:8620560   PMID:8879495   PMID:8889548   PMID:9126293   PMID:9152004   PMID:9353119   PMID:9449663   PMID:9486530   PMID:9566953   PMID:9628901   PMID:9675053   PMID:10349636  
PMID:10436162   PMID:10594069   PMID:10601039   PMID:10694429   PMID:10757804   PMID:10764649   PMID:10862700   PMID:10864459   PMID:11042159   PMID:11076861   PMID:11156606   PMID:11171339  
PMID:11217851   PMID:11731238   PMID:11748134   PMID:11748150   PMID:11784044   PMID:11839813   PMID:12139922   PMID:12196586   PMID:12421703   PMID:12477932   PMID:12642494   PMID:12764040  
PMID:12872126   PMID:12923530   PMID:14681479   PMID:14691545   PMID:14716020   PMID:15033168   PMID:15136147   PMID:15142957   PMID:15163631   PMID:15858069   PMID:16141072   PMID:16141073  
PMID:16221730   PMID:16284245   PMID:16508307   PMID:16602821   PMID:17036046   PMID:17150988   PMID:17229764   PMID:17278136   PMID:17442747   PMID:17652354   PMID:17676634   PMID:17693602  
PMID:17898204   PMID:18234175   PMID:18287559   PMID:18617008   PMID:18653561   PMID:18753373   PMID:18799693   PMID:18948151   PMID:19060336   PMID:19244520   PMID:19279136   PMID:19402755  
PMID:19501082   PMID:19521566   PMID:20410112   PMID:20711475   PMID:20847152   PMID:20943929   PMID:20944551   PMID:21192082   PMID:21521738   PMID:21613488   PMID:21664901   PMID:21731673  
PMID:21761482   PMID:21858105   PMID:21867880   PMID:21873635   PMID:21929743   PMID:22036570   PMID:22102170   PMID:22371696   PMID:22539596   PMID:22875867   PMID:23045641   PMID:23117660  
PMID:23173049   PMID:23362348   PMID:23362349   PMID:23623550   PMID:24353058   PMID:24550112   PMID:24948604   PMID:24952961   PMID:25126785   PMID:26287463   PMID:27100196   PMID:27151949  
PMID:27210758   PMID:27282384   PMID:27384060   PMID:27568519   PMID:28031177   PMID:28135291   PMID:28228269   PMID:28558017   PMID:28912162   PMID:28957665   PMID:29632360   PMID:29760652  
PMID:30197236   PMID:30208054   PMID:30220628   PMID:30240734   PMID:30297418   PMID:30405348   PMID:31685872   PMID:31944180   PMID:32675279   PMID:33060832   PMID:33113370   PMID:33833667  
PMID:34193558   PMID:34321999   PMID:36071051   PMID:36916392   PMID:37549297  


Genomics

Comparative Map Data
Cdh6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391513,028,785 - 13,176,493 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1513,028,787 - 13,173,761 (-)EnsemblGRCm39 Ensembl
GRCm381513,028,699 - 13,176,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1513,028,701 - 13,173,675 (-)EnsemblGRCm38mm10GRCm38
MGSCv371512,963,955 - 13,103,394 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361512,978,925 - 13,036,602 (-)NCBIMGSCv36mm8
Celera1512,808,206 - 12,945,380 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map156.11NCBI
CDH6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38531,193,686 - 31,329,146 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl531,193,686 - 31,329,146 (+)EnsemblGRCh38hg38GRCh38
GRCh37531,193,793 - 31,329,253 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36531,229,553 - 31,360,994 (+)NCBINCBI36Build 36hg18NCBI36
Build 34531,229,552 - 31,360,994NCBI
Celera531,074,550 - 31,205,743 (+)NCBICelera
Cytogenetic Map5p13.3NCBI
HuRef531,162,140 - 31,297,610 (+)NCBIHuRef
CHM1_1531,194,916 - 31,330,813 (+)NCBICHM1_1
T2T-CHM13v2.0531,307,253 - 31,442,732 (+)NCBIT2T-CHM13v2.0
Cdh6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8263,801,630 - 63,952,309 (-)NCBIGRCr8
mRatBN7.2262,079,139 - 62,225,298 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl262,079,137 - 62,225,228 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx269,209,415 - 69,355,815 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0267,332,120 - 67,478,319 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0262,333,575 - 62,479,976 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0263,100,723 - 63,246,618 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl263,101,739 - 63,166,509 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0281,448,794 - 81,594,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4262,547,961 - 62,703,034 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1262,476,190 - 62,631,267 (-)NCBI
Celera256,475,456 - 56,620,253 (+)NCBICelera
Cytogenetic Map2q16NCBI
Cdh6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542617,187,197 - 17,311,186 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542617,187,191 - 17,316,730 (+)NCBIChiLan1.0ChiLan1.0
CDH6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2478,986,650 - 79,126,446 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1577,140,291 - 77,280,100 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0579,013,970 - 79,152,645 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1584,398,468 - 84,529,567 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl584,398,474 - 84,456,013 (-)Ensemblpanpan1.1panPan2
CDH6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1475,950,999 - 75,999,250 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl475,950,999 - 75,961,779 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha475,581,781 - 75,637,173 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0476,509,374 - 76,565,038 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl476,514,925 - 76,565,306 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1476,203,034 - 76,258,370 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0476,332,328 - 76,387,656 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0476,860,858 - 76,916,322 (-)NCBIUU_Cfam_GSD_1.0
Cdh6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213221,968,561 - 222,092,145 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365189,283,459 - 9,334,722 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365189,280,194 - 9,403,320 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1617,531,952 - 17,660,079 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11617,531,862 - 17,660,081 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21618,351,336 - 18,480,953 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDH6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1430,457,589 - 30,594,066 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl430,457,718 - 30,592,105 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607120,688,543 - 20,828,480 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475923,166,122 - 23,305,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475923,160,049 - 23,305,922 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdh6
4670 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:101
Interacting mature miRNAs:101
Transcripts:ENSMUST00000036439
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357459Nhdlq7_mnon-HDL QTL 7 (mouse)Not determined15120489829Mouse
1302121Cliff_mcliff drop aversion (mouse)Not determined15120489829Mouse
1300953Bdt5_mbone density traits 5 (mouse)Not determined15120489829Mouse
5491193Mobq4_mmultigenic obesity QTL 4 (mouse)Not determined15120489829Mouse
1301662Faq8_mfluctuating asymmetry QTL 8 (mouse)Not determined15120489829Mouse
1301023Sluc24_msusceptibility to lung cancer 24 (mouse)Not determined15120489829Mouse
4141541Tglq3_mtriglyceride QTL 3 (mouse)Not determined15120489829Mouse
11062069Bpq31_mblood pressure QTL 31 (mouse)15126273195Mouse
4141446Ffaq4_mfree fatty acid QTL 4 (mouse)Not determined127101390Mouse
1300594Eae2_msusceptibility to experimental allergic encephalomyelitis 2 (mouse)Not determined15131218736Mouse
1301136Pgia8_mproteoglycan induced arthritis 8 (mouse)Not determined15324016724388176Mouse
4141358Ath22_matherosclerosis 22 (mouse)Not determined346465237464652Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562049439620614Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15612948138000244Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15612948150763396Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15682948144963396Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15722948155263396Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15762948155263396Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15812948438763395Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15812948447663396Mouse
10412172Habiir5_mhyperoxic acute lung injury imprinted region 5 (mouse)Not determined15927302243311880Mouse
4140994Shali3_msurvival time to hyperoxic acute lung injury 3 (mouse)Not determined927302243311880Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927302256186850Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
12738432Lfibq25_mliver fibrosis QTL 25 (mouse)151267279313093871Mouse

Markers in Region
Cdh6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15A1UniSTS
cM Map15 UniSTS
Cdh6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15A1UniSTS
cM Map15 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI134319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN531307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN704843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D82029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U67399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000036439   ⟹   ENSMUSP00000037113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1513,028,787 - 13,173,761 (-)Ensembl
GRCm38.p6 Ensembl1513,028,701 - 13,173,675 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1513,059,337 - 13,173,761 (-)Ensembl
GRCm38.p6 Ensembl1513,059,251 - 13,173,675 (-)Ensembl
RefSeq Acc Id: NM_007666   ⟹   NP_031692
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391513,028,785 - 13,173,761 (-)NCBI
GRCm381513,028,699 - 13,173,675 (-)NCBI
MGSCv371512,963,955 - 13,103,394 (-)RGD
Celera1512,808,206 - 12,945,380 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520017   ⟹   XP_006520080
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391513,028,785 - 13,173,592 (-)NCBI
GRCm381513,028,699 - 13,173,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006520018   ⟹   XP_006520081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391513,028,785 - 13,176,493 (-)NCBI
GRCm381513,028,699 - 13,176,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316420   ⟹   XP_017171909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391513,028,785 - 13,173,592 (-)NCBI
GRCm381513,028,699 - 13,173,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316421   ⟹   XP_017171910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391513,028,785 - 13,176,493 (-)NCBI
GRCm381513,028,699 - 13,176,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159108   ⟹   XP_036015001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391513,028,785 - 13,174,314 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031692   ⟸   NM_007666
- Peptide Label: preproprotein
- UniProtKB: P70393 (UniProtKB/Swiss-Prot),   Q3KNY8 (UniProtKB/Swiss-Prot),   P97326 (UniProtKB/Swiss-Prot),   Q3KNZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520080   ⟸   XM_006520017
- Peptide Label: isoform X1
- UniProtKB: P70393 (UniProtKB/Swiss-Prot),   Q3KNY8 (UniProtKB/Swiss-Prot),   P97326 (UniProtKB/Swiss-Prot),   Q3KNZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520081   ⟸   XM_006520018
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017171909   ⟸   XM_017316420
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017171910   ⟸   XM_017316421
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000037113   ⟸   ENSMUST00000036439
RefSeq Acc Id: XP_036015001   ⟸   XM_036159108
- Peptide Label: isoform X1
- UniProtKB: P97326 (UniProtKB/Swiss-Prot),   P70393 (UniProtKB/Swiss-Prot),   Q3KNY8 (UniProtKB/Swiss-Prot),   Q3KNZ1 (UniProtKB/TrEMBL)
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97326-F1-model_v2 AlphaFold P97326 1-790 view protein structure

Promoters
RGD ID:6825852
Promoter ID:MM_KWN:18091
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_007666,   UC007VIG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361513,103,251 - 13,103,751 (-)MPROMDB
RGD ID:8683454
Promoter ID:EPDNEW_M19758
Type:initiation region
Name:Cdh6_1
Description:Mus musculus cadherin 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381513,173,619 - 13,173,679EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107435 AgrOrtholog
Ensembl Genes ENSMUSG00000039385 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000036439 ENTREZGENE
  ENSMUST00000036439.6 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.900.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Catenin_binding_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12563 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107435 ENTREZGENE
NCBI Gene 12563 ENTREZGENE
PANTHER CADHERIN-6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdh6 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CADH6_MOUSE UniProtKB/Swiss-Prot
  P70393 ENTREZGENE
  P97326 ENTREZGENE
  Q3KNY8 ENTREZGENE
  Q3KNZ1 ENTREZGENE, UniProtKB/TrEMBL
  Q3UYK5_MOUSE UniProtKB/TrEMBL
UniProt Secondary P70393 UniProtKB/Swiss-Prot
  Q3KNY8 UniProtKB/Swiss-Prot