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ONTOLOGY REPORT - ANNOTATIONS

Term:COPI-coated vesicle
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Accession:GO:0030137 term browser browse the term
Definition:A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport.
Synonyms:related_synonym: coatomer


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COPI-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr1a actin related protein 1A IDA RGD PMID:10196146 RGD:11541123 NCBI chr 1:245,237,821...245,256,618
Ensembl chr 1:245,237,826...245,256,495 		JBrowse link
G Arcn1 archain 1 located_in ISO (PMID:20502676) RGD PMID:20502676 NCBI chr 8:45,057,617...45,082,224
Ensembl chr 8:45,057,619...45,082,247 		JBrowse link
G Arf1 ADP-ribosylation factor 1 located_in IDA RGD PMID:8496147 RGD:9684998 NCBI chr10:43,997,983...44,014,461
Ensembl chr10:43,997,986...44,014,434 		JBrowse link
G Bnip1 BCL2 interacting protein 1 IDA MMO:0000683,MMO:0000669,MMO:0000663 RGD PMID:18834646 RGD:11553268 NCBI chr10:16,386,876...16,399,124
Ensembl chr10:16,386,841...16,399,157 		JBrowse link
G Ccdc115 coiled-coil domain containing 115 located_in ISO (PMID:26833332) RGD PMID:26833332 NCBI chr 9:36,650,384...36,654,348
Ensembl chr 9:36,649,271...36,653,946 		JBrowse link
G Copa COPI coat complex subunit alpha located_in ISO (PMID:21300694), (PMID:29437892) RGD PMID:21300694 PMID:29437892 NCBI chr13:84,546,483...84,586,879
Ensembl chr13:84,545,943...84,586,874 		JBrowse link
G Copb1 COPI coat complex subunit beta 1 located_in ISO (PMID:19587158) RGD PMID:19587158 NCBI chr 1:168,404,334...168,438,589
Ensembl chr 1:168,404,335...168,438,416 		JBrowse link
G Cope COPI coat complex subunit epsilon located_in ISO (PMID:14645249), (PMID:21300694) RGD PMID:14645249 PMID:21300694 NCBI chr16:19,114,871...19,125,076
Ensembl chr16:19,114,871...19,128,907 		JBrowse link
G Copg2 COPI coat complex subunit gamma 2 located_in ISO (PMID:29437892) RGD PMID:29437892 NCBI chr 4:59,366,086...59,501,591
Ensembl chr 4:59,366,086...59,501,618 		JBrowse link
G Dipk2a divergent protein kinase domain 2A located_in ISO (PMID:19587158) RGD PMID:19587158 NCBI chr 8:95,070,695...95,089,815
Ensembl chr 8:95,030,279...95,089,815 		JBrowse link
G Lman2 lectin, mannose-binding 2 located_in ISO (PMID:10444376) RGD PMID:10444376 NCBI chr17:9,269,236...9,286,923
Ensembl chr17:9,269,022...9,287,265 		JBrowse link
G Pacs1 phosphofurin acidic cluster sorting protein 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:9695949)		 Ensembl
RGD		 PMID:9695949 GO_REF:0000107 NCBI chr 1:202,437,503...202,569,473
Ensembl chr 1:202,437,505...202,569,473 		JBrowse link
G Pacsin1 protein kinase C and casein kinase substrate in neurons 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:9746365)		 Ensembl
RGD		 PMID:9746365 GO_REF:0000107 NCBI chr20:5,718,134...5,768,064
Ensembl chr20:5,719,857...5,765,313 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein IDA MMO:0000663 RGD PMID:18834646 RGD:11553268 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric located_in ISO (PMID:21300694) RGD PMID:21300694 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060 		JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 is_active_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:10214941 GO_REF:0000033, RGD:2317280 NCBI chr 6:104,991,843...105,026,705
Ensembl chr 6:104,991,838...105,026,753 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 located_in ISS
IDA		 GO_REF:0000024
PMID:10214941		 UniProt PMID:10214941 GO_REF:0000024, RGD:2317280 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Use1 unconventional SNARE in the ER 1 IDA MMO:0000683,MMO:0000669,MMO:0000663 RGD PMID:18834646 RGD:11553268 NCBI chr16:18,038,284...18,041,826
Ensembl chr16:18,039,173...18,041,826 		JBrowse link
COPI vesicle coat term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07071244.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Arcn1 archain 1 part_of IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr 8:45,057,617...45,082,224
Ensembl chr 8:45,057,619...45,082,247 		JBrowse link
G Copa COPI coat complex subunit alpha part_of ISO
IBA		 (PMID:14729954)
GO_REF:0000033		 RGD
GO_Central		 PMID:14729954 GO_REF:0000033 NCBI chr13:84,546,483...84,586,879
Ensembl chr13:84,545,943...84,586,874 		JBrowse link
G Copb1 COPI coat complex subunit beta 1 part_of IDA
IBA		 PMID:1840503
GO_REF:0000033		 GO_Central PMID:1840503 GO_REF:0000033, RGD:632446 NCBI chr 1:168,404,334...168,438,589
Ensembl chr 1:168,404,335...168,438,416 		JBrowse link
G Copb2 COPI coat complex subunit beta 2 part_of ISO
IBA
IEA		 (PMID:14729954), (PMID:8335000)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:8335000 PMID:14729954 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:99,161,324...99,183,452
Ensembl chr 8:99,161,350...99,185,197 		JBrowse link
G Cope COPI coat complex subunit epsilon part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:19,114,871...19,125,076
Ensembl chr16:19,114,871...19,128,907 		JBrowse link
G Copg1 COPI coat complex subunit gamma 1 part_of IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:120,366,540...120,392,502
Ensembl chr 4:120,366,542...120,415,616 		JBrowse link
G Copg2 COPI coat complex subunit gamma 2 part_of ISO
IBA
IEA		 (PMID:11056392), (PMID:14729954)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000002		 RGD
GO_Central
Ensembl
InterPro		 PMID:11056392 PMID:14729954 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:59,366,086...59,501,591
Ensembl chr 4:59,366,086...59,501,618 		JBrowse link
G Copz1 COPI coat complex subunit zeta 1 part_of ISO
IBA		 (PMID:11056392), (PMID:14729954)
GO_REF:0000033		 RGD
GO_Central		 PMID:11056392 PMID:14729954 GO_REF:0000033 NCBI chr 7:134,409,523...134,435,661
Ensembl chr 7:134,409,799...134,435,662 		JBrowse link
G Copz2 COPI coat complex subunit zeta 2 part_of ISO
IBA		 (PMID:14729954)
GO_REF:0000033		 RGD
GO_Central		 PMID:14729954 GO_REF:0000033 NCBI chr10:81,832,441...81,845,514
Ensembl chr10:81,832,418...81,845,514 		JBrowse link
G Dipk2a divergent protein kinase domain 2A part_of ISO (PMID:18651652) RGD PMID:18651652 NCBI chr 8:95,070,695...95,089,815
Ensembl chr 8:95,030,279...95,089,815 		JBrowse link
G ENSRNOG00000068070 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr 5:33,483,760...33,485,045 JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,392,812...120,415,616
Ensembl chr 4:120,366,542...120,415,616 		JBrowse link
G Scyl1 SCY1 like pseudokinase 1 part_of ISO (PMID:18556652)
(MGI:3847866|PMID:18556652)		 RGD PMID:18556652 MGI:3847866 NCBI chr 1:203,045,776...203,059,550
Ensembl chr 1:203,045,741...203,059,533 		JBrowse link
G Tmed3 transmembrane p24 trafficking protein 3 part_of IDA
IBA		 PMID:15718469
GO_REF:0000033		 GO_Central PMID:15718469 GO_REF:0000033, RGD:1599272 NCBI chr 8:90,241,516...90,249,429
Ensembl chr 8:90,241,516...90,249,346 		JBrowse link
COPI-coated Golgi to ER transport vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc88a coiled coil domain containing 88A IDA RGD PMID:15749703 RGD:10401274 NCBI chr14:103,104,091...103,256,112
Ensembl chr14:103,103,513...103,252,368 		JBrowse link
G Gnas GNAS complex locus IDA RGD PMID:15749703 RGD:10401274 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
COPI-coated vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07071244.1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044
G Copb2 COPI coat complex subunit beta 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:99,161,324...99,183,452
Ensembl chr 8:99,161,350...99,185,197 		JBrowse link
G Golga5 golgin A5 IDA RGD PMID:15718469 RGD:1599272 NCBI chr 6:121,612,389...121,640,552
Ensembl chr 6:121,612,529...121,640,413 		JBrowse link
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 located_in ISO (PMID:18086916) RGD PMID:18086916 NCBI chr 1:96,347,258...96,358,145
Ensembl chr 1:96,347,150...96,358,157 		JBrowse link
G Kdelr2 KDEL endoplasmic reticulum protein retention receptor 2 located_in IEA
ISS
ISO		 GO_REF:0000044
GO_REF:0000024
(PMID:18086916)		 UniProt
RGD		 PMID:18086916 GO_REF:0000024 GO_REF:0000044 NCBI chr12:11,138,820...11,157,117
Ensembl chr12:11,138,820...11,157,153 		JBrowse link
G Kdelr3 KDEL endoplasmic reticulum protein retention receptor 3 located_in ISO (PMID:18086916) RGD PMID:18086916 NCBI chr 7:111,079,236...111,089,463
Ensembl chr 7:111,079,218...111,101,600 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Tmed7 transmembrane p24 trafficking protein 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:39,318,564...39,325,640
Ensembl chr18:39,297,351...39,325,640 		JBrowse link
G Tmem199 transmembrane protein 199 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26833330)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26833330 GO_REF:0000024 GO_REF:0000107 NCBI chr10:63,402,493...63,407,065
Ensembl chr10:63,402,494...63,407,108 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20629
    cellular anatomical entity 20390
      cytoplasm 11694
        cytoplasmic vesicle 2038
          Golgi-associated vesicle 99
            COPI-coated vesicle 35
              COPI-coated Golgi to ER transport vesicle + 2
              COPI-coated inter-Golgi transport vesicle + 0
              COPI-coated vesicle lumen 0
              COPI-coated vesicle membrane + 22
Path 2
Term Annotations click to browse term
  cellular_component 20629
    cellular anatomical entity 20390
      organelle 13803
        intracellular organelle 13394
          intracellular membrane-bounded organelle 11846
            intracellular vesicle 2045
              cytoplasmic vesicle 2038
                Golgi-associated vesicle 99
                  COPI-coated vesicle 35
                    COPI-coated Golgi to ER transport vesicle + 2
                    COPI-coated inter-Golgi transport vesicle + 0
                    COPI-coated vesicle lumen 0
                    COPI-coated vesicle membrane + 22
paths to the root