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Gene: Copg2 (coat protein complex I subunit gamma 2) Rattus norvegicus

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Symbol:

Copg2

Name:

coat protein complex I subunit gamma 2 (Ensembl:COPI coat complex subunit gamma 2)

RGD ID:

1566215

Description:

Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to be located in COPI-coated vesicle and growth cone. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human COPG2 (coat protein complex I subunit gamma 2); INTERACTS WITH 17beta-estradiol; benzo[a]pyrene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coatomer protein complex, subunit gamma 2; coatomer subunit gamma-2; COPI coat complex subunit gamma 2; gamma-2-coat protein; gamma-2-COP; hypothetical protein LOC301742; LOC301742; RGD1566215; similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP); uncharacterized protein LOC301742

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	60,333,455 - 60,468,953 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	60,333,455 - 60,469,145 (-)	Ensembl				GRCr8
mRatBN7.2	4	59,366,086 - 59,501,591 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	59,366,086 - 59,501,618 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	64,344,115 - 64,472,464 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	60,260,299 - 60,388,646 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	58,662,228 - 58,790,583 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	62,076,632 - 62,212,126 (-)	NCBI
Lyon_Normotensive	4	59,475,587 - 59,611,063 (-)	NCBI
Lyon_Hypertensive	4	60,068,793 - 60,204,280 (-)	NCBI
F344_StmMcwi	4	59,836,177 - 59,964,522 (-)	NCBI
Rnor_6.0	4	58,064,394 - 58,195,242 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	58,064,833 - 58,195,143 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	4	57,823,051 - 57,951,204 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	57,859,156 - 57,958,208 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	54,464,559 - 54,595,409 (-)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

chronic lymphocytic leukemia/small lymphocytic lymphoma (ISO)

esophageal cancer (ISO)

head and neck squamous cell carcinoma (ISO)

lung cancer (ISO)

lymphoma (ISO)

melanoma (ISO)

ovarian cancer (ISO)

ovarian serous cystadenocarcinoma (ISO)

stomach cancer (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

urinary bladder cancer (ISO)

uterine carcinosarcoma (ISO)

uterine corpus endometrial carcinoma (ISO)

Weight Gain (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP)

2,4,6-tribromophenol (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

cypermethrin (EXP)

decabromodiphenyl ether (ISO)

dibutyl phthalate (ISO)

diuron (EXP)

doxorubicin (ISO)

epoxiconazole (ISO)

fipronil (EXP)

glafenine (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

indole-3-methanol (EXP)

ivermectin (ISO)

manganese(II) chloride (EXP)

naphthalene (EXP)

nickel atom (ISO)

nitrates (ISO)

ochratoxin A (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorononanoic acid (ISO)

permethrin (EXP)

pirinixic acid (ISO)

rac-lactic acid (ISO)

rimonabant (ISO)

rotenone (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

tolcapone (EXP)

topotecan (EXP)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intra-Golgi vesicle-mediated transport (ISO)

intracellular protein transport (IEA)

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (IBA)

vesicle-mediated transport (IEA)

Cellular Component

COPI vesicle coat (IBA,IEA,ISO)

COPI-coated vesicle (IEA,ISO)

COPI-coated vesicle membrane (IEA)

cytoplasm (IEA)

cytosol (IEA)

endoplasmic reticulum (IBA)

endoplasmic reticulum-Golgi intermediate compartment (IBA)

Golgi membrane (IBA,IEA,ISO)

growth cone (ISO)

membrane coat (IEA)

Molecular Function

structural molecule activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11056392	PMID:14729954	PMID:18504258	PMID:21300694	PMID:29437892

Genomics

Comparative Map Data

Copg2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	60,333,455 - 60,468,953 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	60,333,455 - 60,469,145 (-)	Ensembl				GRCr8
mRatBN7.2	4	59,366,086 - 59,501,591 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	59,366,086 - 59,501,618 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	64,344,115 - 64,472,464 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	60,260,299 - 60,388,646 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	58,662,228 - 58,790,583 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	62,076,632 - 62,212,126 (-)	NCBI
Lyon_Normotensive	4	59,475,587 - 59,611,063 (-)	NCBI
Lyon_Hypertensive	4	60,068,793 - 60,204,280 (-)	NCBI
F344_StmMcwi	4	59,836,177 - 59,964,522 (-)	NCBI
Rnor_6.0	4	58,064,394 - 58,195,242 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	58,064,833 - 58,195,143 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	4	57,823,051 - 57,951,204 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	57,859,156 - 57,958,208 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	54,464,559 - 54,595,409 (-)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

COPG2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	130,506,238 - 130,668,748 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	130,505,553 - 130,668,755 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	7	130,146,079 - 130,353,588 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	129,933,316 - 130,004,138 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	129,740,032 - 129,810,823	NCBI
Celera	7	124,941,854 - 125,101,434 (-)	NCBI		Celera
Cytogenetic Map	7	q32.2	NCBI
HuRef	7	124,508,567 - 124,669,036 (-)	NCBI		HuRef
CHM1_1	7	130,079,500 - 130,287,197 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	131,819,957 - 131,983,050 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	129,531,485 - 129,690,100 (-)	NCBI

Copg2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	30,747,552 - 30,873,712 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	30,741,505 - 30,873,729 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	30,747,554 - 30,896,815 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	30,747,554 - 30,896,794 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	6	30,698,411 - 30,700,638 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv37	6	30,759,559 - 30,846,760 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	30,739,598 - 30,826,921 (-)	NCBI		MGSCv36	mm8
Celera	6	30,758,336 - 30,881,456 (-)	NCBI		Celera
Cytogenetic Map	6	A3.3	NCBI
cM Map	6	12.54	NCBI

COPG2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	167,325,318 - 167,487,904 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	19,335,764 - 19,498,148 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	122,470,494 - 122,633,223 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	134,988,505 - 135,148,940 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	134,988,505 - 135,149,512 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

COPG2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	6,334,407 - 6,435,789 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	6,336,840 - 6,449,614 (+)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	6,010,826 - 6,125,813 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	6,085,045 - 6,200,061 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	6,085,089 - 6,200,013 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	6,290,387 - 6,405,108 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	6,035,480 - 6,150,362 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	6,179,136 - 6,293,896 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Copg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	2	207,988,277 - 208,122,893 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024405118	24,515,387 - 24,650,218 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936579	4,647,946 - 4,785,336 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936579	4,648,006 - 4,782,815 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COPG2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	18,209,263 - 18,332,216 (+)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	18	18,209,378 - 18,331,536 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	19,229,764 - 19,327,957 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COPG2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	21	103,470,449 - 103,639,361 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666042	4,089,527 - 4,258,336 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	21	99,142,097 - 99,300,386 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	99,138,512 - 99,300,412 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Copg2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624783	5,670,069 - 5,798,150 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624783	5,670,115 - 5,797,847 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	14	45,060,071 - 45,185,207 (+)	Ensembl

Copg2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	108,695,426 - 108,814,385 (+)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in Copg2
1401 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	273
Count of miRNA genes:	166
Interacting mature miRNAs:	218
Transcripts:	ENSRNOT00000033706
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	15644309	60644309	Rat
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	35113290	80113290	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	59753119	104753119	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	57613242	102613242	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	40490442	75726188	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	58079875	82597589	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58817672	103817672	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
61336	Bp21	Blood pressure QTL 21	4.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58080146	80212111	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	18900697	63900697	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	37269577	82269577	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	40471453	75939996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	22288453	63245191	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	18900697	63900697	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	30448961	82336920	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	18913151	63913151	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	27862204	62997402	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	21925151	66925151	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	1	63900697	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58079875	92690793	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	57613242	102613242	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	57613242	102613242	Rat
631671	Iddm11	Insulin dependent diabetes mellitus QTL 11	3.6	0.0012	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	59603319	80216952	Rat

Markers in Region

BE110063

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,365,190 - 59,365,342 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,063,499 - 58,063,650	NCBI	Rnor6.0
Rnor_5.0	4	57,822,156 - 57,822,307	UniSTS	Rnor5.0
Celera	4	54,463,664 - 54,463,815	UniSTS
RH 3.4 Map	4	347.3	UniSTS
Cytogenetic Map	4	q44	UniSTS
Cytogenetic Map	4	q22	UniSTS

AW049845

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,398,760 - 59,398,859 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,092,747 - 58,092,845	NCBI	Rnor6.0
Rnor_5.0	4	57,851,782 - 57,851,880	UniSTS	Rnor5.0
Celera	4	54,495,339 - 54,495,437	UniSTS
Cytogenetic Map	4	q22	UniSTS

Copg2as1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,365,971 - 59,366,400 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,064,280 - 58,064,708	NCBI	Rnor6.0
Rnor_5.0	4	57,822,937 - 57,823,365	UniSTS	Rnor5.0
Celera	4	54,464,445 - 54,464,873	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH127576

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,365,605 - 59,365,795 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,063,914 - 58,064,103	NCBI	Rnor6.0
Rnor_5.0	4	57,822,571 - 57,822,760	UniSTS	Rnor5.0
Celera	4	54,464,079 - 54,464,268	UniSTS
RH 3.4 Map	4	345.72	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH130551

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,412,143 - 59,412,333 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,106,133 - 58,106,322	NCBI	Rnor6.0
Rnor_5.0	4	57,865,168 - 57,865,357	UniSTS	Rnor5.0
RGSC_v3.4	4	57,866,304 - 57,866,493	UniSTS	RGSC3.4
Celera	4	54,508,725 - 54,508,914	UniSTS
RH 3.4 Map	4	351.5	UniSTS
Cytogenetic Map	4	q22	UniSTS

BE097790

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,389,119 - 59,389,318 (+)	MAPPER	mRatBN7.2
mRatBN7.2	4	59,394,581 - 59,394,780 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,085,033 - 58,085,231	NCBI	Rnor6.0
Rnor_5.0	4	57,844,067 - 57,844,265	UniSTS	Rnor5.0
Celera	4	54,489,008 - 54,489,206	UniSTS
Celera	4	54,487,484 - 54,487,682	UniSTS
RH 3.4 Map	4	348.8	UniSTS
Cytogenetic Map	4	q22	UniSTS

BE111944

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,387,637 - 59,387,787 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,083,553 - 58,083,702	NCBI	Rnor6.0
Rnor_5.0	4	57,842,587 - 57,842,736	UniSTS	Rnor5.0
Celera	4	54,486,001 - 54,486,150	UniSTS
RH 3.4 Map	4	351.9	UniSTS
Cytogenetic Map	4	q22	UniSTS

BF402517

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,383,725 - 59,383,855 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,082,243 - 58,082,370	NCBI	Rnor6.0
Celera	4	54,480,362 - 54,480,490	UniSTS
RH 3.4 Map	4	345.22	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH137477

Rat Assembly	Chr	Position (strand)	Source
Celera	4	54,485,190 - 54,485,386	UniSTS
RH 3.4 Map	4	345.5	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH139028

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,396,600 - 59,396,826 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,090,587 - 58,090,812	NCBI	Rnor6.0
Rnor_5.0	4	57,849,622 - 57,849,847	UniSTS	Rnor5.0
Celera	4	54,493,179 - 54,493,404	UniSTS
RH 3.4 Map	4	347.2	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH139683

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,366,344 - 59,366,549 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,064,653 - 58,064,857	NCBI	Rnor6.0
Rnor_5.0	4	57,823,310 - 57,823,514	UniSTS	Rnor5.0
Celera	4	54,464,818 - 54,465,022	UniSTS
RH 3.4 Map	4	344.71	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH141530

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,396,600 - 59,396,814 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,090,587 - 58,090,800	NCBI	Rnor6.0
Rnor_5.0	4	57,849,622 - 57,849,835	UniSTS	Rnor5.0
Celera	4	54,493,179 - 54,493,392	UniSTS
RH 3.4 Map	4	345.01	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH141653

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,398,696 - 59,398,877 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,092,683 - 58,092,863	NCBI	Rnor6.0
Rnor_5.0	4	57,851,718 - 57,851,898	UniSTS	Rnor5.0
Celera	4	54,495,275 - 54,495,455	UniSTS
RH 3.4 Map	4	345.01	UniSTS
Cytogenetic Map	4	q22	UniSTS

AU048642

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,436,793 - 59,437,002 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,133,216 - 58,133,424	NCBI	Rnor6.0
Rnor_5.0	4	57,889,870 - 57,890,078	UniSTS	Rnor5.0
RGSC_v3.4	4	57,891,231 - 57,891,439	UniSTS	RGSC3.4
Celera	4	54,533,465 - 54,533,673	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH124785

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	59,365,887 - 59,365,989 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	58,064,196 - 58,064,297	NCBI	Rnor6.0
Rnor_5.0	4	57,822,853 - 57,822,954	UniSTS	Rnor5.0
Celera	4	54,464,361 - 54,464,462	UniSTS
Cytogenetic Map	4	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
275	156	729	1591	4066	1008	1725	133	871	486	853	156	5377	2587	448	3979	38	1386	741	909	160	158

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM088301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM088672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM091200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM099334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM100327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM104860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM120771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN804600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN805880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN805881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033706 ⟹ ENSRNOP00000038134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	60,333,455 - 60,468,953 (-)	Ensembl
mRatBN7.2 Ensembl	4	59,366,089 - 59,501,618 (-)	Ensembl
Rnor_6.0 Ensembl	4	58,064,833 - 58,195,143 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097578 ⟹ ENSRNOP00000080313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	60,333,455 - 60,468,953 (-)	Ensembl
mRatBN7.2 Ensembl	4	59,366,086 - 59,500,621 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144298 ⟹ ENSRNOP00000099289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	60,333,455 - 60,469,145 (-)	Ensembl

RefSeq Acc Id:

NM_001106929 ⟹ NP_001100399

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	60,333,455 - 60,468,953 (-)	NCBI
mRatBN7.2	4	59,366,086 - 59,501,591 (-)	NCBI
Dahl_SR_JrHsd	4	62,076,632 - 62,212,126 (-)	NCBI
Lyon_Normotensive	4	59,475,587 - 59,611,063 (-)	NCBI
Lyon_Hypertensive	4	60,068,793 - 60,204,280 (-)	NCBI
F344_StmMcwi	4	59,836,177 - 59,964,522 (-)	NCBI
Rnor_6.0	4	58,064,394 - 58,195,242 (-)	NCBI
Rnor_5.0	4	57,823,051 - 57,951,204 (-)	NCBI
RGSC_v3.4	4	57,859,156 - 57,958,208 (-)	RGD
Celera	4	54,464,559 - 54,595,409 (-)	NCBI

Sequence:

show sequence

GTGAGAACACAGGGCCTGCCTTCCTGCAGCGTCTTCCGCTCGCCGGCTGCGGCGCCTGGGACGG
TTGCGGTGGGTCTGGGCGCTGGGAAGCCGTCCAAGATGATTAAAAAATTCGACAAGAAGGACGA
GGAGTCTGGTAGTGGTTCCAATCCTTTCCAGCATTTGGAGAAGAGTGCTGTCTTGCAGGAGGCA
CGCATATTTAACGAAACGCCCATCAATCCAAGAAGATGCTTGCATATCTTGACAAAGATTCTTT
ACTTACTCAACCAGGGTGAACACTTCGGAACTATGGAAGCTACAGAAGCCTTCTTTGCAATGAC
TCGATTGTTTCAATCTAATGATCAAACATTGAGGAGAATGTGCTACCTTACCATCAAGGAAATG
GCCACTATCTCTGAGGATGTGATCATTGTCACAAGCAGTCTGACCAAGGACATGACTGGAAAGG
AAGACGTGTACCGAGGCCCAGCCATCAGGGCTCTCTGCAGAATCACGGATGGAACAATGTTGCA
AGCTATTGAAAGATACATGAAGCAGGCCATTGTGGATAAAGTTTCCAGTGTATCCAGTTCAGCA
CTGGTCTCTTCCTTACATATGATGAAGATAAGCTATGATGTGGTTAAACGATGGATAAATGAAG
CCCAAGAAGCTGCATCAAGTGACAATATCATGGTGCAGTACCATGCATTGGGAGTGCTCTATCA
CCTCCGGAAGAATGATCGGCTTGCTGTCTCCAAGATGCTAAATAAGTTTACCAAGTCTGGTCTC
AAATCACAGTTTGCATACTGTATGCTGATTCGGATTGCTAGTCGCTTACTGAAAGAAAGCGAGG
ATGGTCATGAAAGTCCACTCTTTGATTTCATTGAGAGCTGCTTGCGAAATAAACATGAAATGGT
TATCTATGAAGCTGCTTCTGCCATTATTCATCTTCCTAACTGTACTGCAAGAGAGCTGGCACCT
GCTGTCTCAGTTCTTCAACTTTTCTGTAGCTCTCCTAAACCAGCCTTGAGATATGCAGCTGTGA
GGACCCTGAACAAGGTGGCAATGAAGCACCCCTCTGCTGTAACTGCCTGTAATCTGGATTTAGA
AAACTTAATCACAGACTCAAACAGAAGCATTGCTACCCTGGCCATTACAACATTGCTCAAAACA
GGAAGTGAGAGCAGTGTGGACAGGCTTATGAAGCAGATCTCTTCTTTTGTGTCTGAAATCTCAG
ATGAGTTCAAGGTGGTTGTTGTACAGGCAATCAGTGCTCTGTGTCAGAAGTACCCTCGGAAGCA
CAGCGTTATGATGACTTTTCTTTCCAACATGCTTCGAGATGATGGAGGTTTTGAATACAAAAAG
GCCATTGTGGACTGCATAATCAGCATTGTGGAAGAGAACCCTGAGAGTAAAGAAGCTGGTCTAG
CCCACCTCTGTGAATTCATTGAGGACTGTGAACACACCGTTCTGGCTACTAAAATTCTCCACTT
ATTGGGCAAAGAGGGCCCTAGAACTCCTGTTCCCTCCAAGTATATCAGATTCATTTTTAATAGG
GTAGTCCTGGAGAATGAGGCTGTCAGAGCTGCTGCTGTGAGTGCTTTGGCTAAATTTGGGGCTC
AGAATGAGAGCCTTCTCCCAAGTATCCTTGTACTCTTACAAAGGTGTATGATGGATACTGATGA
CGAGGTACGGGACCGAGCTACCTTCTACCTGAATGTGCTACAGCAGAGACAGATGGCCCTGAAT
GCTACATATATCTTCAATGGTCTGACAGTCTCTATACCAGGGATGGAAAAGGCCTTACACCAAT
ACACATTGGAGCCTTCAGAAAAACCCTTTGATATGAAGTCAATTCCTCTTGCTATGGCTCCTGT
CTTTGAACAGAAGTCAGAGATCACACTTGTGACTCCTAAGCCAGAGAAGTTGGCTCCTTCCAGG
CAAGACATTTTCCAAGAACAGTTGGCTGCCATTCCTGAGTTTGTGAACCTGGGGCCCTTGTTCA
AGTCTTCTGAGCCTGTGCAGCTGACAGAAGCAGAGACAGAGTATTTCGTTCGCTGTGTGAAGCA
CATGTTCACTGACCACATTGTATTCCAGTTTGACTGTACCAACACTCTGAATGACCAGCTGCTG
GAGAAAGTAACTGTGCAGATGGAACCATCCGATTCCTATGAAGTGCTGTGCTGTGTCCCAGCTC
CCAGCCTTCCTTACAATCAACCAGGAATATGCTACACACTTGTTCGCTTGCCAGATGAGGACCC
TACAGCAGTTGCAGGCACCTTTAGCTGTACCATGAAGTTTACAGTCCGGGACTGTGACCCTAAT
ACTGGAGTTCCAGATGAAGATGGATATGATGATGAGTATGTGCTGGAAGATCTTGAAGTGACTG
TGTCTGACCACATTCAGAAGATACTAAAACCTAACTTTGCTGCTGCCTGGGAAGAGGTGGGAGA
TGCCTTTGAGAAAGAAGAGACCTTTGCCCTGAGCTCTACAAAAACCCTTGAAGACGCTGTCAAC
AACATCATCACGTTTCTCGGCATGCAGCCATGTGAGAGATCAGATAAAGTACCCGAGAATAAGA
ATTCCCATTCCCTCTATCTAGCAGGAGTTTACAGAGGTGGCTATGACTTACTGGTGCGGTCCAG
GCTGGCCCTAGCAGATGGCGTGACCATGCAGGTGACTGTGAGAAGCAGAGAGAAAACACCTGTG
GATGTTATCTTGGCTTCTGTGGGATAAGTTCTTGCTGGGAAGGGTGATGTTGCTGTGCCCTCCC
TATTGGTGGTTTTTAGGCTAGTGACACAAACTTCCCAGAATTACACTAAAGATTCATAATGACT
TTGAAGAAGCAAATCCAGTGTTTGGCCCTGAGCCAGCAGATCAAACAAATGTCTGTCTTTGCGC
ATGGACTTTAGTGTTTCTTCCCTCCTCATTGTCTTACTCATTCAGCCTTGGTAGGACAGTGCAG
CTTTGAGTGGGCTTGGTAATCAGATTCTACTTACGCTATTCTACAACTGCTTAGCTTCATTATA
TGCTGTTACTTAATGTGTGAAAACTCTTGGCAACGGTGGAAAAGTTTATCCCAGAAGGGTGGAT
GGGGAGGGGAAGCCGGAATCCATTTTTGTCACAGTTTGTTTTTATTAATAGAAAATAAACACTC
ATTCATTCCAGTTTCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100399	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4ABY2	(Get FASTA)	NCBI Sequence Viewer
	EDM15266	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038134

RefSeq Acc Id:

NP_001100399 ⟸ NM_001106929

- UniProtKB:

A0A0H2UHV9 (UniProtKB/TrEMBL), A0A8I5ZST5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTM
EATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRAL
CRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWINEAQEAASSDNIMV
QYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCMLIRIASRLLKESEDGHESPLFDFIE
SCLRNKHEMVIYEAASAIIHLPNCTARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPS
AVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAIS
ALCQKYPRKHSVMMTFLSNMLRDDGGFEYKKAIVDCIISIVEENPESKEAGLAHLCEFIEDCEH
TVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESLLPSILVL
LQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSIPGMEKALHQYTLEPSEKPFDM
KSIPLAMAPVFEQKSEITLVTPKPEKLAPSRQDIFQEQLAAIPEFVNLGPLFKSSEPVQLTEAE
TEYFVRCVKHMFTDHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLCCVPAPSLPYNQPGICY
TLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPDEDGYDDEYVLEDLEVTVSDHIQKILKPN
FAAAWEEVGDAFEKEETFALSSTKTLEDAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYR
GGYDLLVRSRLALADGVTMQVTVRSREKTPVDVILASVG

hide sequence

Ensembl Acc Id:

ENSRNOP00000038134 ⟸ ENSRNOT00000033706

Ensembl Acc Id:

ENSRNOP00000080313 ⟸ ENSRNOT00000097578

Ensembl Acc Id:

ENSRNOP00000099289 ⟸ ENSRNOT00000144298

Protein Domains

Clathrin/coatomer adaptor adaptin-like N-terminal Coatomer gamma subunit appendage Ig-like subdomain Coatomer subunit gamma C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ABY2-F1-model_v2	AlphaFold	D4ABY2	1-715	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692941

Promoter ID:

EPDNEW_R3466

Type:

multiple initiation site

Name:

Copg2_1

Description:

coatomer protein complex, subunit gamma 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	58,195,198 - 58,195,258	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566215	AgrOrtholog
BioCyc Gene	G2FUF-45338	BioCyc
Ensembl Genes	ENSRNOG00000011014	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000033706	ENTREZGENE
Gene3D-CATH	1.25.10.10	UniProtKB/Swiss-Prot
	2.60.40.1480	UniProtKB/Swiss-Prot
InterPro	ARM-like	UniProtKB/Swiss-Prot
	ARM-type_fold	UniProtKB/Swiss-Prot
	Clathrin/coatomer_adapt-like_N	UniProtKB/Swiss-Prot
	Clathrin_app_Ig-like_sf	UniProtKB/Swiss-Prot
	Coatomer_gsu	UniProtKB/Swiss-Prot
	Coatomer_gsu_app_Ig-like_dom	UniProtKB/Swiss-Prot
	Coatomer_gsu_app_sf	UniProtKB/Swiss-Prot
NCBI Gene	301742	ENTREZGENE
PANTHER	COATOMER SUBUNIT GAMMA-2	UniProtKB/Swiss-Prot
	PTHR10261	UniProtKB/Swiss-Prot
Pfam	Adaptin_N	UniProtKB/Swiss-Prot
	COP-gamma_platf	UniProtKB/Swiss-Prot
PhenoGen	Copg2	PhenoGen
PIRSF	Coatomer_gamma_subunit	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000011014	RatGTEx
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot
	SSF49348	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHV9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZST5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L4I3_RAT	UniProtKB/TrEMBL
	COPG2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Copg2	coat protein complex I subunit gamma 2	Copg2	COPI coat complex subunit gamma 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2019-11-11	Copg2	COPI coat complex subunit gamma 2	Copg2	coatomer protein complex, subunit gamma 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-12	Copg2	coatomer protein complex, subunit gamma 2	RGD1566215	similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1566215	similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)	RGD1566215_predicted	similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1566215_predicted	similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) (predicted)	LOC301742	similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC301742	similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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