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ONTOLOGY REPORT - ANNOTATIONS

Term:spliceosomal snRNP assembly
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Accession:GO:0000387 term browser browse the term
Definition:The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
Synonyms:related_synonym: spliceosomal snRNP biogenesis

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spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clns1a chloride nucleotide-sensitive channel 1A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936498:6,239,866...6,265,743 JBrowse link
G Coil coilin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:5,950,215...5,968,772
Ensembl chrNW_004936490:5,950,034...5,962,095 		JBrowse link
G Ddx20 DEAD-box helicase 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936690:400,563...413,488
Ensembl chrNW_004936690:400,596...413,530 		JBrowse link
G Gemin2 gem nuclear organelle associated protein 2 involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936494:12,717,358...12,737,019
Ensembl chrNW_004936494:12,717,268...12,740,193 		JBrowse link
G Gemin4 gem nuclear organelle associated protein 4 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:7,033,354...7,040,178
Ensembl chrNW_004936538:7,004,175...7,043,459 		JBrowse link
G Gemin5 gem nuclear organelle associated protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936515:7,923,113...7,971,507
Ensembl chrNW_004936515:7,922,852...7,970,925 		JBrowse link
G Gemin6 gem nuclear organelle associated protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936508:12,441,742...12,447,597 JBrowse link
G Gemin7 gem nuclear organelle associated protein 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936706:1,629,738...1,638,997
Ensembl chrNW_004936706:1,629,746...1,639,024 		JBrowse link
G Gemin8 gem nuclear organelle associated protein 8 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:3,553,462...3,576,281
Ensembl chrNW_004936470:3,553,468...3,576,314 		JBrowse link
G LOC101973672 gem-associated protein 6-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936675:352,324...353,554 JBrowse link
G LOC101973962 small nuclear ribonucleoprotein E involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936715:1,359,528...1,359,972 JBrowse link
G LOC110597639 small nuclear ribonucleoprotein G-like involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936482:7,766,607...7,766,869 JBrowse link
G LOC110598504 small nuclear ribonucleoprotein G-like involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936471:37,088,095...37,088,504 JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:2,903,363...2,916,629
Ensembl chrNW_004936596:2,903,358...2,916,629 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:1,379,515...1,388,538
Ensembl chrNW_004936722:1,379,515...1,388,546 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936475:18,632,022...18,667,515
Ensembl chrNW_004936475:18,632,052...18,672,247 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:8,379,386...8,418,963
Ensembl chrNW_004936534:8,382,485...8,418,938 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein NOT|involved_in ISO
IEA		 (PMID:15314151) UniProt
Ensembl		 PMID:15314151 GO_REF:0000107 NCBI chrNW_004936769:450,919...490,938
Ensembl chrNW_004936769:450,917...491,210 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:16,142,231...16,161,761
Ensembl chrNW_004936485:16,157,485...16,163,698 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936476:24,371,268...24,389,355
Ensembl chrNW_004936476:24,368,521...24,389,596 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in IEA UniProt
TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936550:1,323,351...1,335,074
Ensembl chrNW_004936550:1,323,378...1,335,069 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936706:2,065,315...2,068,709
Ensembl chrNW_004936706:2,065,419...2,067,487 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936619:728,759...744,367
Ensembl chrNW_004936619:728,114...745,551 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936567:849,300...855,214
Ensembl chrNW_004936567:849,397...855,187 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936507:11,973,818...11,980,370
Ensembl chrNW_004936507:11,973,564...11,982,283 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936491:14,442,904...14,450,717
Ensembl chrNW_004936491:14,443,026...14,450,631 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936587:1,679,570...1,700,610
Ensembl chrNW_004936587:1,678,439...1,701,216 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in ISO (MGI:5904379|PMID:28263986) CACAO PMID:28263986 MGI:5904379 NCBI chrNW_004936476:13,646,678...13,660,891
Ensembl chrNW_004936476:13,644,627...13,660,839 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO (PMID:35188580) UniProt PMID:35188580 NCBI chrNW_004936794:672,123...673,703 JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936561:4,709,351...4,729,849
Ensembl chrNW_004936561:4,709,402...4,729,907 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10523320) MGI
Ensembl		 PMID:10523320 GO_REF:0000107 NCBI chrNW_004936727:1,746,072...1,751,944
Ensembl chrNW_004936727:1,745,942...1,751,959 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:8,379,386...8,418,963
Ensembl chrNW_004936534:8,382,485...8,418,938 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:604,709...632,788
Ensembl chrNW_004936580:605,138...633,104 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11867543) MGI
InterPro
Ensembl		 PMID:11867543 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936994:239,688...252,269
Ensembl chrNW_004936994:239,682...252,317 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936514:11,175,410...11,220,928
Ensembl chrNW_004936514:11,175,526...11,220,241 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:7,780,022...7,814,575
Ensembl chrNW_004936538:7,780,022...7,814,575 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:450,919...490,938
Ensembl chrNW_004936769:450,917...491,210 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO (PMID:34131137) UniProt PMID:34131137 NCBI chrNW_004936794:672,123...673,703 JBrowse link
G Usp4 ubiquitin specific peptidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:941,042...989,781
Ensembl chrNW_004936529:938,501...989,884 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15975
    cellular process 15075
      cellular component organization or biogenesis 6486
        cellular component biogenesis 3213
          ribonucleoprotein complex biogenesis 429
            protein-RNA complex assembly 168
              spliceosomal snRNP assembly 37
                spliceosomal tri-snRNP complex assembly 11
Path 2
Term Annotations click to browse term
  biological_process 15975
    metabolic process 9644
      organic substance metabolic process 9219
        organic cyclic compound metabolic process 5211
          nucleobase-containing compound metabolic process 4756
            nucleobase-containing compound biosynthetic process 3907
              nucleic acid biosynthetic process 3682
                RNA biosynthetic process 3578
                  RNA processing 839
                    RNA splicing 367
                      RNA splicing, via transesterification reactions 290
                        RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 290
                          mRNA splicing, via spliceosome 290
                            spliceosomal snRNP assembly 37
                              spliceosomal tri-snRNP complex assembly 11
paths to the root