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ONTOLOGY REPORT - ANNOTATIONS

Term:retinal cone cell development
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Accession:GO:0046549 term browser browse the term
Definition:Development of a cone cell, one of the sensory cells in the eye that reacts to the presence of light. Cone cells contain the photopigment iodopsin or cyanopsin and are responsible for photopic (daylight) vision.


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retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16249514) Ensembl
MGI		 PMID:16249514 GO_REF:0000107 NCBI chr11:67,452,403...67,461,752
Ensembl chr11:67,452,406...67,461,752 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr 2:98,346,456...98,398,601
Ensembl chr 2:98,346,188...98,398,601 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324 		JBrowse link
G DIO3 iodothyronine deiodinase 3 involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20203194) Ensembl
MGI		 PMID:20203194 GO_REF:0000107 NCBI chr14:101,561,495...101,563,452
Ensembl chr14:101,560,139...101,563,452 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17065522), (PMID:21052544) Ensembl
MGI		 PMID:17065522 PMID:21052544 GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr 5:45,254,948...45,696,380
Ensembl chr 5:45,254,948...45,696,498 		JBrowse link
G MIR124-1 microRNA 124-1 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr 8:9,903,388...9,903,472
Ensembl chr 8:9,903,388...9,903,472 		JBrowse link
G MIR124-2 microRNA 124-2 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr 8:64,379,149...64,379,257
Ensembl chr 8:64,379,149...64,379,257 		JBrowse link
G MIR182 microRNA 182 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,770,383...129,770,492
Ensembl chr 7:129,770,383...129,770,492 		JBrowse link
G MIR183 microRNA 183 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,774,905...129,775,014
Ensembl chr 7:129,774,905...129,775,014 		JBrowse link
G MIR96 microRNA 96 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,774,692...129,774,769
Ensembl chr 7:129,774,692...129,774,769 		JBrowse link
G PDE6C phosphodiesterase 6C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr10:93,612,537...93,666,010
Ensembl chr10:93,612,537...93,666,010 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G THRB thyroid hormone receptor beta involved_in
acts_upstream_of		 IEA
ISO		 (PMID:20203194) Ensembl
MGI		 PMID:20203194 GO_REF:0000107 NCBI chr 3:24,117,153...24,495,708
Ensembl chr 3:24,117,153...24,495,756 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:119,415,476...119,424,985
Ensembl chr11:119,415,476...119,424,985 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:17,493,900...17,544,416
Ensembl chr11:17,493,895...17,544,416 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19613
    developmental process 7605
      anatomical structure development 7016
        neural retina development 113
          camera-type eye photoreceptor cell differentiation 48
            retinal cone cell differentiation 22
              retinal cone cell development 18
Path 2
Term Annotations click to browse term
  biological_process 19613
    developmental process 7605
      anatomical structure development 7016
        multicellular organism development 5629
          system development 4907
            nervous system development 3058
              neurogenesis 2141
                generation of neurons 1854
                  neuron differentiation 1770
                    photoreceptor cell differentiation 94
                      eye photoreceptor cell differentiation 71
                        camera-type eye photoreceptor cell differentiation 48
                          retinal cone cell differentiation 22
                            retinal cone cell development 18
paths to the root