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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine nucleoside catabolic process
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Accession:GO:0046135 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
Synonyms:exact_synonym: pyrimidine nucleoside breakdown;   pyrimidine nucleoside catabolism;   pyrimidine nucleoside degradation


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pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22525402)		 UniProt
RGD		 PMID:22525402 GO_REF:0000024 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO (MGI:2656023|PMID:12692563) RGD PMID:12692563 MGI:2656023 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Cda cytidine deaminase involved_in IDA
IBA
ISO		 GO_REF:0000033
(PMID:9596658)		 GO_Central
RGD		 PMID:9596658 PMID:675715 GO_REF:0000033, RGD:2316616 NCBI chr 5:150,556,615...150,583,231
Ensembl chr 5:150,556,615...150,583,231 		JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO (PMID:26945630) RGD PMID:26945630 NCBI chr15:33,726,590...33,755,611
Ensembl chr15:33,723,435...33,755,576 		JBrowse link
G Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:1512248)		 Ensembl
UniProt
RGD		 PMID:1512248 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 involved_in ISO
IBA		 (PMID:7488099)
GO_REF:0000033
(MGI:5476603|PMID:23355744), (MGI:73237|PMID:7744869)		 RGD
GO_Central		 PMID:7488099 PMID:7744869 PMID:23355744 GO_REF:0000033 MGI:5476603 MGI:73237 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO
IBA		 (PMID:12849978), (PMID:21855639)
GO_REF:0000033
(MGI:2683856|PMID:14715930)		 RGD
GO_Central		 PMID:12849978 PMID:14715930 PMID:21855639 GO_REF:0000033 MGI:2683856 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11455
      organonitrogen compound metabolic process 5663
        organonitrogen compound catabolic process 1512
          pyrimidine-containing compound catabolic process 32
            pyrimidine nucleoside catabolic process 11
              blasticidin S catabolic process 0
              pyrimidine deoxyribonucleoside catabolic process + 1
              pyrimidine ribonucleoside catabolic process + 9
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11455
      primary metabolic process 10015
        nucleobase-containing compound metabolic process 5524
          nucleobase-containing small molecule metabolic process 688
            nucleoside metabolic process 58
              nucleoside catabolic process 22
                pyrimidine nucleoside catabolic process 11
                  blasticidin S catabolic process 0
                  pyrimidine deoxyribonucleoside catabolic process + 1
                  pyrimidine ribonucleoside catabolic process + 9
paths to the root