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ONTOLOGY REPORT - ANNOTATIONS

Term:stereocilium
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Accession:GO:0032420 term browser browse the term
Definition:An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles.
Synonyms:never_in_taxon: NCBITaxon:4751 ! Fungi

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stereocilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 is_active_in ISO (PMID:26754646) RGD
MGI		 PMID:16301216 PMID:26754646 RGD:8548636 NCBI chrNW_004624743:9,849,070...10,292,392 JBrowse link
G Ankrd24 ankyrin repeat domain 24 located_in ISO (MGI:6885507|PMID:35175278) UniProt PMID:35175278 MGI:6885507 NCBI chrNW_004624828:5,410,032...5,441,824 JBrowse link
G Atp8b1 ATPase phospholipid transporting 8B1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624792:3,154,512...3,287,681
Ensembl chrNW_004624792:3,156,367...3,287,751 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624757:55,861...88,703
Ensembl chrNW_004624757:55,811...88,562 		JBrowse link
G Calb1 calbindin 1 ISO RGD PMID:16120789 RGD:7175527 NCBI chrNW_004624744:1,930,085...1,960,950
Ensembl chrNW_004624744:1,929,988...1,963,464 		JBrowse link
G Calb2 calbindin 2 ISO RGD PMID:16120789 RGD:7175527 NCBI chrNW_004624746:13,549,339...13,577,929
Ensembl chrNW_004624746:13,548,540...13,578,501 		JBrowse link
G Cdh23 cadherin related 23 located_in ISO (MGI:2447265|PMID:12485990), (PMID:15882574), (PMID:16481439), (PMID:17050716) MGI PMID:12485990 PMID:15882574 PMID:16481439 PMID:17050716 MGI:2447265 NCBI chrNW_004624754:5,356,006...5,725,774
Ensembl chrNW_004624754:5,393,733...5,724,876 		JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:2,688,784...2,704,742
Ensembl chrNW_004624894:2,688,814...2,704,747 		JBrowse link
G Clic5 chloride intracellular channel 5 located_in ISO (PMID:17021174) MGI PMID:17021174 NCBI chrNW_004624754:14,335,173...14,433,721
Ensembl chrNW_004624754:14,370,425...14,434,269 		JBrowse link
G Clrn1 clarin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:28,373,111...28,412,282
Ensembl chrNW_004624730:28,373,120...28,412,282 		JBrowse link
G Dock4 dedicator of cytokinesis 4 located_in ISO (MGI:3640027|PMID:16464467) HGNC-UCL PMID:16464467 MGI:3640027 NCBI chrNW_004624739:17,705,893...18,152,679
Ensembl chrNW_004624739:17,705,769...18,152,858 		JBrowse link
G Eps8 EGFR pathway substrate 8, signaling adaptor located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:22,250,988...22,424,957
Ensembl chrNW_004624752:22,295,413...22,426,717 		JBrowse link
G Espn espin located_in ISO (PMID:29572253)
(PMID:20510926)		 UniProt
MGI		 PMID:20510926 PMID:29572253 NCBI chrNW_004624818:5,015,275...5,042,862
Ensembl chrNW_004624818:5,016,019...5,042,724 		JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal located_in ISO (MGI:4820459|PMID:20660251) UniProt PMID:20660251 MGI:4820459 NCBI chrNW_004624801:10,511,539...10,518,073
Ensembl chrNW_004624801:10,511,673...10,517,753 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 located_in ISO (MGI:4421424|PMID:20137774), (PMID:30380417) UniProt PMID:20137774 PMID:30380417 MGI:4421424 NCBI chrNW_004624761:23,876,226...24,039,591
Ensembl chrNW_004624761:23,876,301...24,039,603 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:25605782) MGI PMID:25605782 NCBI chrNW_004624786:928,123...939,515 JBrowse link
G Loxhd1 lipoxygenase homology PLAT domains 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624778:10,106,009...10,282,085
Ensembl chrNW_004624778:10,106,975...10,282,085 		JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 is_active_in ISO (PMID:35727972) MGI PMID:35727972 NCBI chrNW_004624774:11,607,603...11,623,582
Ensembl chrNW_004624774:11,607,504...11,623,544 		JBrowse link
G Morn4 MORN repeat containing 4 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624737:9,257,195...9,271,259
Ensembl chrNW_004624737:9,257,196...9,267,516 		JBrowse link
G Mpp1 MAGUK p55 scaffold protein 1 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624963:445,559...467,976
Ensembl chrNW_004624963:445,588...467,976 		JBrowse link
G Myo15a myosin XVA located_in ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004624849:3,283,180...3,345,456
Ensembl chrNW_004624849:3,284,085...3,344,759 		JBrowse link
G Myo1c myosin IC located_in ISO (PMID:17050716) MGI PMID:17050716 NCBI chrNW_004624786:4,188,143...4,211,712
Ensembl chrNW_004624786:4,188,143...4,211,732 		JBrowse link
G Myo7a myosin VIIA is_active_in
located_in		 ISO (PMID:26754646)
(MGI:5806014|PMID:27525485), (PMID:12485990), (PMID:16481439), (PMID:20016102)		 MGI PMID:12485990 PMID:16481439 PMID:20016102 PMID:26754646 PMID:27525485 MGI:5806014 NCBI chrNW_004624863:205,468...283,840
Ensembl chrNW_004624863:205,478...283,839 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 located_in ISO (PMID:24920589) MGI PMID:24920589 NCBI chrNW_004624801:4,612,890...4,630,454
Ensembl chrNW_004624801:4,612,849...4,630,451 		JBrowse link
G Nherf2 NHERF family PDZ scaffold protein 2 located_in ISO (PMID:24920589) MGI PMID:24920589 NCBI chrNW_004624913:210,315...220,936
Ensembl chrNW_004624913:210,315...221,538 		JBrowse link
G Ocm oncomodulin ISO RGD PMID:16120789 RGD:7175527 NCBI chrNW_004624740:31,461,152...31,581,141
Ensembl chrNW_004624740:31,461,266...31,465,473 		JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 located_in ISO (PMID:23533177) MGI PMID:23533177 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436 		JBrowse link
G Pcdh15 protocadherin related 15 located_in
is_active_in		 ISO (MGI:3722521|PMID:14570705)
(PMID:26754646)		 HGNC-UCL
MGI		 PMID:14570705 PMID:26754646 MGI:3722521 NCBI chrNW_004624791:9,042,311...9,992,341
Ensembl chrNW_004624791:9,195,902...9,990,131 		JBrowse link
G Pdzd7 PDZ domain containing 7 located_in ISO (MGI:5806014|PMID:27525485), (PMID:31448880) MGI PMID:27525485 PMID:31448880 MGI:5806014 NCBI chrNW_004624831:608,270...624,679
Ensembl chrNW_004624831:608,970...624,617 		JBrowse link
G Pls1 plastin 1 located_in ISO (MGI:5608770|PMID:25124451) UniProt PMID:25124451 MGI:5608770 NCBI chrNW_004624730:19,164,360...19,302,369
Ensembl chrNW_004624730:19,163,783...19,302,222 		JBrowse link
G Pls3 plastin 3 ISO RGD PMID:12378542 RGD:731234 NCBI chrNW_004624940:120,073...216,522
Ensembl chrNW_004624940:120,073...216,622 		JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:15316084) MGI PMID:15316084 NCBI chrNW_004624755:15,765,162...15,886,023
Ensembl chrNW_004624755:15,771,286...15,886,348 		JBrowse link
G Pvalb parvalbumin ISO RGD PMID:16120789 RGD:7175527 NCBI chrNW_004624752:10,969,746...10,985,437
Ensembl chrNW_004624752:10,969,757...10,986,061 		JBrowse link
G Rdx radixin located_in ISO (PMID:17021174) MGI PMID:17021174 NCBI chrNW_004624784:5,198,433...5,304,953
Ensembl chrNW_004624784:5,221,045...5,271,045 		JBrowse link
G Rhoc ras homolog family member C located_in ISO (MGI:5789047|PMID:27269051) UniProt PMID:27269051 MGI:5789047 NCBI chrNW_004624772:8,481,826...8,487,530
Ensembl chrNW_004624772:8,479,015...8,486,171 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624756:2,133,261...2,260,133
Ensembl chrNW_004624756:2,133,339...2,247,643 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO RGD PMID:16301216 RGD:8548636 NCBI chrNW_004624788:5,239,858...5,355,186
Ensembl chrNW_004624788:5,243,807...5,355,073 		JBrowse link
G Tprn taperin located_in ISO (MGI:4440409|PMID:20170899), (MGI:5789047|PMID:27269051) UniProt PMID:20170899 PMID:27269051 MGI:4440409 MGI:5789047 NCBI chrNW_004624760:750,833...758,329
Ensembl chrNW_004624760:750,871...758,433 		JBrowse link
G Tspear thrombospondin type laminin G domain and EAR repeats located_in ISO (MGI:5430693|PMID:22678063) UniProt PMID:22678063 MGI:5430693 NCBI chrNW_004624745:30,186,498...30,232,200
Ensembl chrNW_004624745:30,183,218...30,232,182 		JBrowse link
G Ush1c USH1 protein network component harmonin located_in
is_active_in		 ISO (PMID:12485990), (PMID:20016102)
(PMID:26754646)		 RGD
MGI		 PMID:12485990 PMID:16301216 PMID:20016102 PMID:26754646 RGD:8548636 NCBI chrNW_004624766:9,097,466...9,153,602
Ensembl chrNW_004624766:9,105,990...9,153,663 		JBrowse link
G Ush2a usherin ISO hair cell RGD PMID:16301216 RGD:8548636 NCBI chrNW_004624835:48,213...758,640
Ensembl chrNW_004624835:49,877...758,640 		JBrowse link
G Whrn whirlin located_in ISO (MGI:3528095|PMID:15590699), (MGI:3528099|PMID:15590698), (MGI:3606745|PMID:15654330) RGD
UniProt		 PMID:15590698 PMID:15590699 PMID:15654330 PMID:16434480 MGI:3528095 MGI:3528099 MGI:3606745 RGD:1600128 NCBI chrNW_004624760:20,700,632...20,788,628
Ensembl chrNW_004624760:20,700,593...20,788,628 		JBrowse link
G Zswim6 zinc finger SWIM-type containing 6 located_in ISO (PMID:25105228) MGI PMID:25105228 NCBI chrNW_004624815:8,481,026...8,673,090
Ensembl chrNW_004624815:8,482,855...8,673,090 		JBrowse link
stereocilium base term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clic5 chloride intracellular channel 5 located_in ISO (MGI:7606441|PMID:37952086)
PMID:24285636		 UniProt PMID:24285636 PMID:37952086 MGI:7606441 RGD:401966878 NCBI chrNW_004624754:14,335,173...14,433,721
Ensembl chrNW_004624754:14,370,425...14,434,269 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624774:5,344,696...5,367,009
Ensembl chrNW_004624774:5,344,696...5,367,009 		JBrowse link
G Myo7a myosin VIIA located_in ISO (MGI:3714249|PMID:17567809) UniProt PMID:17567809 MGI:3714249 NCBI chrNW_004624863:205,468...283,840
Ensembl chrNW_004624863:205,478...283,839 		JBrowse link
G Pjvk pejvakin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624844:424,903...432,841
Ensembl chrNW_004624844:426,636...433,043 		JBrowse link
G Ptprq protein tyrosine phosphatase receptor type Q located_in ISO (MGI:6858788|PMID:24285636), (MGI:7606441|PMID:37952086) UniProt PMID:24285636 PMID:37952086 MGI:6858788 MGI:7606441 NCBI chrNW_004624750:17,621,520...17,863,902
Ensembl chrNW_004624750:17,622,627...17,863,899 		JBrowse link
G Rdx radixin located_in ISO (MGI:6757712|PMID:30159668), (MGI:6858788|PMID:24285636) UniProt PMID:24285636 PMID:30159668 MGI:6757712 MGI:6858788 NCBI chrNW_004624784:5,198,433...5,304,953
Ensembl chrNW_004624784:5,221,045...5,271,045 		JBrowse link
G Tprn taperin located_in ISO (MGI:6757712|PMID:30159668), (MGI:6858788|PMID:24285636), (MGI:7606441|PMID:37952086), (PMID:28209736), (PMID:30380417) UniProt PMID:24285636 PMID:28209736 PMID:30159668 PMID:30380417 PMID:37952086 MGI:6757712 MGI:6858788 MGI:7606441 NCBI chrNW_004624760:750,833...758,329
Ensembl chrNW_004624760:750,871...758,433 		JBrowse link
G Triobp TRIO and F-actin binding protein located_in ISO (PMID:28209736) MGI PMID:28209736 NCBI chrNW_004624752:10,130,857...10,186,242 JBrowse link
stereocilium coat term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkhd1l1 PKHD1 like 1 located_in ISO (PMID:31444330) MGI PMID:31444330 NCBI chrNW_004624763:8,459,642...8,610,164
Ensembl chrNW_004624763:8,459,661...8,608,838 		JBrowse link
stereocilium membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1b calcium voltage-gated channel subunit alpha1 B ISO RGD PMID:10408625 RGD:11556226 (All species) (All species) NCBI chrNW_004624760:78,754...257,901
Ensembl chrNW_004624760:81,236...257,787 		JBrowse link
G Myo1c myosin IC located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624786:4,188,143...4,211,712
Ensembl chrNW_004624786:4,188,143...4,211,732 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624756:2,133,261...2,260,133
Ensembl chrNW_004624756:2,133,339...2,247,643 		JBrowse link
G Ush2a usherin located_in ISO (MGI:5430895|PMID:16301217) BHF-UCL PMID:16301217 MGI:5430895 NCBI chrNW_004624835:48,213...758,640
Ensembl chrNW_004624835:49,877...758,640 		JBrowse link
stereocilium shaft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fchsd2 FCH and double SH3 domains 2 located_in ISO (MGI:6233193|PMID:23437151) UniProt PMID:23437151 MGI:6233193 NCBI chrNW_004624817:3,819,124...4,134,757
Ensembl chrNW_004624817:3,819,178...4,135,044 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624774:5,344,696...5,367,009
Ensembl chrNW_004624774:5,344,696...5,367,009 		JBrowse link
stereocilium tip term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc14a cell division cycle 14A located_in ISO (MGI:6118860|PMID:29293958) UniProt PMID:29293958 MGI:6118860 NCBI chrNW_004624857:3,246,027...3,416,536
Ensembl chrNW_004624857:3,245,934...3,417,199 		JBrowse link
G Cdh23 cadherin related 23 located_in ISO (PMID:12485990), (PMID:17050716), (PMID:24920589) MGI PMID:12485990 PMID:17050716 PMID:24920589 NCBI chrNW_004624754:5,356,006...5,725,774
Ensembl chrNW_004624754:5,393,733...5,724,876 		JBrowse link
G Ceacam16 CEA cell adhesion molecule 16, tectorial membrane component located_in ISO (PMID:21368133) MGI PMID:21368133 NCBI chrNW_004624907:1,627,941...1,638,436
Ensembl chrNW_004624907:1,631,279...1,638,266 		JBrowse link
G Coro1a coronin 1A is_active_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chrNW_004624782:13,106,416...13,111,394
Ensembl chrNW_004624782:13,105,153...13,111,357 		JBrowse link
G Eps8 EGFR pathway substrate 8, signaling adaptor located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:22,250,988...22,424,957
Ensembl chrNW_004624752:22,295,413...22,426,717 		JBrowse link
G Eps8l2 EPS8 signaling adaptor L2 located_in ISO (MGI:5509070|PMID:23918390) UniProt PMID:23918390 MGI:5509070 NCBI chrNW_004624766:21,775,467...21,790,496
Ensembl chrNW_004624766:21,775,326...21,787,553 		JBrowse link
G Espn espin located_in
is_active_in		 ISO (MGI:5766107|PMID:26754646), (PMID:22264607)
(PMID:26754646)		 MGI PMID:22264607 PMID:26754646 MGI:5766107 NCBI chrNW_004624818:5,015,275...5,042,862
Ensembl chrNW_004624818:5,016,019...5,042,724 		JBrowse link
G Espnl espin like located_in
is_active_in		 ISO (MGI:5805759|PMID:26926603)
(PMID:26754646)		 UniProt
MGI		 PMID:26754646 PMID:26926603 MGI:5805759 NCBI chrNW_004624847:3,279,022...3,299,321
Ensembl chrNW_004624847:3,279,555...3,298,589 		JBrowse link
G Homer2 homer scaffold protein 2 located_in ISO (MGI:5688813|PMID:25816005) UniProt PMID:25816005 MGI:5688813 NCBI chrNW_004624768:18,626,353...18,751,279
Ensembl chrNW_004624768:18,635,283...18,721,984 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 located_in ISO (PMID:23217710) MGI PMID:23217710 NCBI chrNW_004624754:21,744,784...21,763,161
Ensembl chrNW_004624754:21,749,312...21,762,896 		JBrowse link
G Morn4 MORN repeat containing 4 located_in
is_active_in		 ISO (MGI:5766107|PMID:26754646)
(PMID:26754646)		 UniProt
MGI		 PMID:26754646 MGI:5766107 NCBI chrNW_004624737:9,257,195...9,271,259
Ensembl chrNW_004624737:9,257,196...9,267,516 		JBrowse link
G Myo3a myosin IIIA located_in
is_active_in		 IEA
ISO		 (PMID:26754646) TreeGrafter
MGI		 PMID:26754646 GO_REF:0000118 NCBI chrNW_004624796:2,774,153...2,983,853 JBrowse link
G Myo3b myosin IIIB is_active_in
located_in		 ISO (PMID:26754646)
(MGI:5766107|PMID:26754646), (PMID:22264607)		 MGI
UniProt		 PMID:22264607 PMID:26754646 MGI:5766107 NCBI chrNW_004624787:7,723,491...7,915,619
Ensembl chrNW_004624787:7,685,741...8,130,810 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 located_in ISO (PMID:24920589) MGI PMID:24920589 NCBI chrNW_004624801:4,612,890...4,630,454
Ensembl chrNW_004624801:4,612,849...4,630,451 		JBrowse link
G Pdzd7 PDZ domain containing 7 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624831:608,270...624,679
Ensembl chrNW_004624831:608,970...624,617 		JBrowse link
G Pkhd1l1 PKHD1 like 1 located_in ISO (PMID:31444330) MGI PMID:31444330 NCBI chrNW_004624763:8,459,642...8,610,164
Ensembl chrNW_004624763:8,459,661...8,608,838 		JBrowse link
G Strc stereocilin located_in ISO (MGI:5430850|PMID:21165971), (PMID:18849963), (PMID:24920589), (PMID:31448880) MGI PMID:18849963 PMID:21165971 PMID:24920589 PMID:31448880 MGI:5430850 NCBI chrNW_004624838:2,894,945...2,913,030
Ensembl chrNW_004624838:2,896,147...2,910,268 		JBrowse link
G Tmc1 transmembrane channel like 1 located_in ISO (PMID:22105175) MGI PMID:22105175 NCBI chrNW_004624736:93,146...563,264
Ensembl chrNW_004624736:94,840...203,597 		JBrowse link
G Tmc2 transmembrane channel like 2 located_in ISO (PMID:22105175) MGI PMID:22105175 NCBI chrNW_004624741:3,723,601...3,788,403
Ensembl chrNW_004624741:3,733,672...3,786,971 		JBrowse link
G Ush1c USH1 protein network component harmonin located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:9,097,466...9,153,602
Ensembl chrNW_004624766:9,105,990...9,153,663 		JBrowse link
G Whrn whirlin located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:20,700,632...20,788,628
Ensembl chrNW_004624760:20,700,593...20,788,628 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 15721
    cellular anatomical entity 15624
      organelle 11370
        stereocilium 62
          actin filament bundle of stereocilium 0
          stereocilium base 8
          stereocilium coat 1
          stereocilium membrane 4
          stereocilium shaft 2
          stereocilium tip 21
Path 2
Term Annotations click to browse term
  cellular_component 15721
    cellular anatomical entity 15624
      cell projection 2350
        plasma membrane bounded cell projection 2295
          neuron projection 1457
            stereocilium 62
              actin filament bundle of stereocilium 0
              stereocilium base 8
              stereocilium coat 1
              stereocilium membrane 4
              stereocilium shaft 2
              stereocilium tip 21
paths to the root