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ONTOLOGY REPORT - ANNOTATIONS

Term:stereocilium base
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Accession:GO:0120044 term browser browse the term
Definition:The tapered base of the stereocilium adjacent to where it joins the hair cell body. This region contains a rootlet comprised of bundled actin filaments which spans the joint and stabilizes the stereocilium.
Synonyms:exact_synonym: stereocilium taper


show annotations for term's descendants           Sort by:
stereocilium base term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clic5 chloride intracellular channel 5 located_in IDA
ISO		 PMID:24285636
(MGI:7606441|PMID:37952086)		 RGD PMID:37952086 PMID:24285636 MGI:7606441, RGD:401966878 NCBI chr 9:16,710,980...16,813,502
Ensembl chr 9:16,710,980...16,813,427 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:30380417)		 GO_Central
RGD		 PMID:30380417 GO_REF:0000033 NCBI chr18:33,984,689...33,998,094
Ensembl chr18:33,984,689...33,998,094 		JBrowse link
G Myo7a myosin VIIA located_in ISO (MGI:3714249|PMID:17567809) RGD PMID:17567809 MGI:3714249 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Pjvk pejvakin located_in ISO (PMID:28209736) RGD PMID:28209736 NCBI chr 3:61,594,644...61,605,051
Ensembl chr 3:61,596,641...61,605,045 		JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q located_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:6858788|PMID:24285636), (MGI:7606441|PMID:37952086)		 Ensembl
UniProt
RGD		 PMID:24285636 PMID:37952086 GO_REF:0000024 GO_REF:0000107 MGI:6858788 MGI:7606441 NCBI chr 7:42,834,455...43,016,807
Ensembl chr 7:42,837,109...43,016,917 		JBrowse link
G Rdx radixin located_in ISO (MGI:6757712|PMID:30159668), (MGI:6858788|PMID:24285636) RGD PMID:24285636 PMID:30159668 MGI:6757712 MGI:6858788 NCBI chr 8:52,379,494...52,437,673
Ensembl chr 8:52,379,494...52,437,678 		JBrowse link
G Tprn taperin is_active_in
located_in		 IBA
ISS
ISO		 GO_REF:0000033
GO_REF:0000024
(MGI:6757712|PMID:30159668), (MGI:6858788|PMID:24285636), (MGI:7606441|PMID:37952086), (PMID:28209736), (PMID:30380417)		 GO_Central
UniProt
RGD		 PMID:24285636 PMID:28209736 PMID:30159668 PMID:30380417 PMID:37952086 GO_REF:0000024 GO_REF:0000033 MGI:6757712 MGI:6858788 MGI:7606441 NCBI chr 3:8,076,164...8,083,642
Ensembl chr 3:8,075,137...8,083,642 		JBrowse link
G Triobp TRIO and F-actin binding protein located_in ISO (PMID:28209736) RGD PMID:28209736 NCBI chr 7:110,505,916...110,569,301
Ensembl chr 7:110,506,248...110,562,474 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21392
    cellular anatomical entity 21234
      stereocilium base 8
Path 2
Term Annotations click to browse term
  cellular_component 21392
    cellular anatomical entity 21234
      cell projection 2691
        plasma membrane bounded cell projection 2602
          neuron projection 1649
            stereocilium 65
              stereocilium base 8
paths to the root