ONTOLOGY REPORT - ANNOTATIONS
Term: collagen catabolic process
Accession: GO:0030574
browse the term
Definition: The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
Synonyms: exact_synonym: collagen breakdown; collagen catabolism; collagen degradation
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Adam15
ADAM metallopeptidase domain 15
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:174,754,629...174,765,136
Ensembl chr 2:174,754,633...174,765,113
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Ctsb
cathepsin B
involved_in
ISO IEA
(PMID:22952693) GO_REF:0000107
RGD Ensembl
PMID:22952693
GO_REF:0000107
NCBI chr15:37,389,636...37,410,508
Ensembl chr15:37,389,629...37,410,500
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Ctsk
cathepsin K
involved_in acts_upstream_of_or_within
ISO
(PMID:22952693) (PMID:19834056) MGI:2182131 (PMID:19834056)
RGD
PMID:19834056 PMID:22952693
NCBI chr 2:183,058,586...183,069,551
Ensembl chr 2:183,058,569...183,069,550
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Ctsl
cathepsin L
involved_in
ISO ISS
(PMID:10716919), (PMID:22952693) GO_REF:0000024 (MGI:6437015|PMID:10716919)
RGD UniProt
PMID:10716919 PMID:22952693
GO_REF:0000024 MGI:6437015
NCBI chr17:764,370...770,533
Ensembl chr17:764,309...770,548
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Ctss
cathepsin S
involved_in
ISO IEA
(PMID:22952693) GO_REF:0000107
RGD Ensembl
PMID:22952693
GO_REF:0000107
NCBI chr 2:183,086,437...183,114,483
Ensembl chr 2:183,086,437...183,114,483
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Mmp1
matrix metallopeptidase 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,658,588...4,679,099
Ensembl chr 8:4,658,588...4,679,097
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Mmp10
matrix metallopeptidase 10
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,689,840...4,697,748
Ensembl chr 8:4,689,840...4,697,748
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Mmp11
matrix metallopeptidase 11
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:18622425)
GO_Central RGD
PMID:18622425
GO_REF:0000033
NCBI chr20:12,730,846...12,739,629
Ensembl chr20:12,730,836...12,739,628
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Mmp12
matrix metallopeptidase 12
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,581,785...4,591,687
Ensembl chr 8:4,581,785...4,599,611
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Mmp13
matrix metallopeptidase 13
involved_in acts_upstream_of_or_within
ISO IEA ISS IBA
(PMID:8576151), (PMID:9065415) GO_REF:0000107 GO_REF:0000024 (MGI:3771509|PMID:17987127) GO_REF:0000033 (PMID:15563592)
RGD Ensembl UniProt GO_Central
PMID:8576151 PMID:9065415 PMID:15563592 PMID:17987127
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:3771509
NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
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Mmp14
matrix metallopeptidase 14
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1276107 (PMID:18022611)
GO_Central RGD
PMID:18022611
GO_REF:0000033
NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864
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Mmp15
matrix metallopeptidase 15
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr19:9,663,449...9,684,943
Ensembl chr19:9,663,449...9,684,943
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Mmp16
matrix metallopeptidase 16
involved_in acts_upstream_of_or_within
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 MGI:101900 (PMID:18022611)
Ensembl GO_Central RGD
PMID:18022611
GO_REF:0000033 GO_REF:0000107
NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388
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Mmp17
matrix metallopeptidase 17
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:27,074,398...27,099,317
Ensembl chr12:27,074,409...27,099,316
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Mmp19
matrix metallopeptidase 19
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:1,221,229...1,229,555
Ensembl chr 7:1,221,343...1,229,555
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Mmp1b
matrix metallopeptidase 1b (interstitial collagenase)
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,598,326...4,606,965
Ensembl chr 8:4,598,391...4,606,965
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Mmp2
matrix metallopeptidase 2
involved_in acts_upstream_of_or_within
IDA IEA IBA ISO
GO_REF:0000107 GO_REF:0000043 GO_REF:0000033 MGI:2386252 (PMID:17440987)
Ensembl UniProt GO_Central RGD
PMID:17440987 PMID:22410640
GO_REF:0000033 GO_REF:0000043 GO_REF:0000107, RGD:7207278
NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
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Mmp20
matrix metallopeptidase 20
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,789,415...4,830,035
Ensembl chr 8:4,789,415...4,830,035
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Mmp21
matrix metallopeptidase 21
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:188,480,186...188,485,855
Ensembl chr 1:188,480,186...188,485,855
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Mmp23
matrix metallopeptidase 23
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:166,239,643...166,242,734
Ensembl chr 5:166,239,644...166,242,433
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Mmp24
matrix metallopeptidase 24
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:144,279,096...144,323,572
Ensembl chr 3:144,279,096...144,323,572
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Mmp27
matrix metallopeptidase 27
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,745,887...4,755,806
Ensembl chr 8:4,745,883...4,755,806
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Mmp28
matrix metallopeptidase 28
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:68,241,138...68,264,866
Ensembl chr10:68,241,138...68,264,866
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Mmp3
matrix metallopeptidase 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,640,397...4,653,963
Ensembl chr 8:4,640,416...4,653,961
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Mmp7
matrix metallopeptidase 7
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,848,186...4,855,908
Ensembl chr 8:4,848,186...4,855,902
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Mmp8
matrix metallopeptidase 8
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:4,724,009...4,733,864
Ensembl chr 8:4,724,029...4,733,520
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Mmp9
matrix metallopeptidase 9
involved_in acts_upstream_of_or_within
IDA IEA IBA ISO
GO_REF:0000043 GO_REF:0000107 GO_REF:0000033 (PMID:9291580)
UniProt Ensembl GO_Central RGD
PMID:9291580 PMID:22410640
GO_REF:0000033 GO_REF:0000043 GO_REF:0000107, RGD:7207278
NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
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Mrc2
mannose receptor, C type 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:12972549)
Ensembl RGD
PMID:12972549
GO_REF:0000107
NCBI chr10:90,261,986...90,323,187
Ensembl chr10:90,261,394...90,322,856
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Pepd
peptidase D
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 1:87,536,650...87,681,233
Ensembl chr 1:87,536,609...87,681,231
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Prss2
protease, serine, 2
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 4:70,278,304...70,283,385
Ensembl chr 4:70,278,304...70,283,385
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Retreg1
reticulophagy regulator 1
acts_upstream_of_or_within
ISO
(PMID:34338405)
RGD
PMID:34338405
NCBI chr 2:76,335,609...76,474,817
Ensembl chr 2:76,335,609...76,493,898
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Retreg2
reticulophagy regulator family member 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:34338405)
Ensembl RGD
PMID:34338405
GO_REF:0000107
NCBI chr 9:76,640,282...76,646,400
Ensembl chr 9:76,640,319...76,646,395
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Retreg3
reticulophagy regulator family member 3
acts_upstream_of_or_within
ISO
(PMID:34338405)
RGD
PMID:34338405
NCBI chr10:86,028,767...86,052,575
Ensembl chr10:86,028,774...86,052,692
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Cst3
cystatin C
involved_in
ISO
(PMID:10545518)
RGD
PMID:10545518
NCBI chr 3:136,336,923...136,340,796
Ensembl chr 3:136,336,920...136,340,822
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Idua
alpha-L-iduronidase
acts_upstream_of_or_within
ISO
MGI:2176236 (PMID:19834056)
RGD
PMID:19834056
NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
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Vsir
V-set immunoregulatory receptor
involved_in
ISO
(PMID:20666777)
RGD
PMID:20666777
NCBI chr20:28,281,582...28,307,262
Ensembl chr20:28,281,596...28,303,878
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Fap
fibroblast activation protein, alpha
involved_in
ISO
(PMID:10455171)
RGD
PMID:10455171
NCBI chr 3:47,138,823...47,207,671
Ensembl chr 3:47,138,813...47,225,545
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Itgb1
integrin subunit beta 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:10455171)
UniProt RGD
PMID:10455171
GO_REF:0000024
NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
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