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ONTOLOGY REPORT - ANNOTATIONS

Term:base-excision repair, gap-filling
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Accession:GO:0006287 term browser browse the term
Definition:Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template.


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base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen acts_upstream_of_or_within ISO (PMID:15177179) RGD PMID:15177179 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within IDA
ISO		 (PMID:15177179) RGD PMID:15177179 PMID:17412650 RGD:2302580 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:10559260), (PMID:10559261)
(PMID:15177179)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:10559260 PMID:10559261 PMID:15177179 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO
IBA		 (PMID:10559260)
GO_REF:0000033		 RGD
GO_Central		 PMID:10559260 GO_REF:0000033 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15177179)
GO_REF:0000107		 RGD
Ensembl		 PMID:15177179 GO_REF:0000107 NCBI chr 1:133,382,764...133,399,578
Ensembl chr 1:133,382,766...133,398,567 		JBrowse link
G Poll DNA polymerase lambda involved_in ISO
ISS		 (PMID:19806195)
GO_REF:0000024		 RGD
UniProt		 PMID:19806195 GO_REF:0000024 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19694
    metabolic process 11456
      primary metabolic process 10016
        nucleobase-containing compound metabolic process 5524
          nucleic acid metabolic process 4949
            DNA metabolic process 949
              base-excision repair, gap-filling 6
Path 2
Term Annotations click to browse term
  biological_process 19694
    metabolic process 11456
      organic substance metabolic process 10971
        organic cyclic compound metabolic process 6031
          nucleobase-containing compound metabolic process 5524
            nucleic acid metabolic process 4949
              DNA metabolic process 949
                DNA repair 545
                  base-excision repair 43
                    base-excision repair, gap-filling 6
paths to the root