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ONTOLOGY REPORT - ANNOTATIONS

Term:all-trans retinal binding
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Accession:GO:0005503 term browser browse the term
Definition:Binding to all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: all-trans retinaldehyde binding;   trans retinal binding;   visual yellow binding
 broad_synonym: vitamin A binding
 related_synonym: xanthopsin


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all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP-binding cassette, sub-family A member 4 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:121,837,547...121,973,719
Ensembl chr 3:121,838,092...121,973,772 		JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:138,121,217...138,138,444
Ensembl chr 3:138,121,227...138,136,653 		JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:139,338,371...139,345,362
Ensembl chr 5:139,338,372...139,342,788 		JBrowse link
G Opn3 opsin 3 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:175,489,993...175,520,198
Ensembl chr 1:175,489,987...175,520,342 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 28831
    binding 17526
      small molecule binding 5672
        vitamin binding 143
          retinal binding 19
            all-trans retinal binding 4
Path 2
Term Annotations click to browse term
  molecular_function 28831
    binding 17526
      lipid binding 926
        isoprenoid binding 45
          retinoid binding 42
            retinal binding 19
              all-trans retinal binding 4
paths to the root