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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase II core promoter sequence-specific DNA binding
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Accession:GO:0000979 term browser browse the term
Definition:Binding to a DNA sequence that is part of the core promoter of a RNA polymerase II-transcribed gene.


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RNA polymerase II core promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPB CCAAT enhancer binding protein beta enables IEA Ensembl GO_REF:0000107 NCBI chr17:51,722,633...51,723,673
Ensembl chr17:51,722,426...51,724,305 		JBrowse link
G EGR1 early growth response 1 ISO RGD PMID:21451041 RGD:5131648 NCBI chr 2:140,440,829...140,445,302
Ensembl chr 2:140,441,421...140,445,296 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,385,015...109,450,941 		JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl GO_REF:0000107 NCBI chr 7:98,449,508...98,451,971
Ensembl chr 7:98,449,349...98,455,554 		JBrowse link
G GBX2 gastrulation brain homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chr15:136,029,393...136,032,568
Ensembl chr15:136,029,070...136,032,316 		JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:103,963,863...104,009,318
Ensembl chr 7:103,963,248...104,009,226 		JBrowse link
G GTF2B general transcription factor IIB enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:127,522,802...127,559,605
Ensembl chr 4:127,522,870...127,561,135 		JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:120,563,752...120,566,023
Ensembl chr 8:120,563,752...120,566,177 		JBrowse link
G H3-3A H3.3 histone A enables IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,923,077...13,948,484 		JBrowse link
G H3-3B H3.3 histone B enables IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726 		JBrowse link
G HDAC1 histone deacetylase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,411 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (PMID:15713121) MGI PMID:15713121 NCBI chr 7:30,320,090...30,329,413
Ensembl chr 7:30,320,410...30,329,408 		JBrowse link
G PAX6 paired box 6 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,978,287...29,001,200 		JBrowse link
G POU2F1 POU class 2 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:83,592,051...83,776,465
Ensembl chr 4:83,596,269...83,776,430 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chr13:68,301,566...68,433,951
Ensembl chr13:68,302,322...68,433,944 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit enables IEA Ensembl GO_REF:0000107 NCBI chr 2:6,594,869...6,602,684
Ensembl chr 2:6,593,969...6,603,469 		JBrowse link
G REST RE1 silencing transcription factor enables ISO (PMID:29024663) MGI PMID:29024663 NCBI chr 8:56,035,182...56,061,140
Ensembl chr 8:56,035,150...56,215,013 		JBrowse link
G RFX7 regulatory factor X7 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:115,732,167...115,871,951
Ensembl chr 1:115,734,347...115,871,084 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:54,250,494...54,263,492
Ensembl chr 6:54,250,515...54,266,893 		JBrowse link
G STAT1 signal transducer and activator of transcription 1 enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:95,593,201...95,646,324
Ensembl chr15:95,593,211...95,646,260 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 enables ISO (PMID:25412659) ParkinsonsUK-UCL PMID:25412659 NCBI chr  X:57,382,211...57,466,700
Ensembl chr  X:57,382,354...57,466,697 		JBrowse link
G TBP TATA-box binding protein enables ISO (PMID:29111974) ARUK-UCL PMID:29111974 NCBI chr 1:5,669...23,675 JBrowse link
G TBPL1 TATA-box binding protein like 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:29,899,956...29,936,773
Ensembl chr 1:29,899,850...29,936,680 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18691
    binding 16250
      organic cyclic compound binding 5529
        nucleic acid binding 3505
          transcription regulatory region nucleic acid binding 1353
            transcription cis-regulatory region binding 1348
              RNA polymerase II transcription regulatory region sequence-specific DNA binding 1239
                RNA polymerase II core promoter sequence-specific DNA binding 23
Path 2
Term Annotations click to browse term
  molecular_function 18691
    binding 16250
      organic cyclic compound binding 5529
        nucleic acid binding 3505
          DNA binding 2219
            sequence-specific DNA binding 1530
              sequence-specific double-stranded DNA binding 1411
                transcription cis-regulatory region binding 1348
                  RNA polymerase II transcription regulatory region sequence-specific DNA binding 1239
                    RNA polymerase II core promoter sequence-specific DNA binding 23
paths to the root