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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:atrophic gastritis
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Accession:DOID:8929 term browser browse the term
Definition:GASTRITIS with atrophy of the GASTRIC MUCOSA, the GASTRIC PARIETAL CELLS, and the mucosal glands leading to ACHLORHYDRIA. Atrophic gastritis usually progresses from chronic gastritis.
Synonyms:exact_synonym: atrophic gastritides;   gastric atrophy
 primary_id: MESH:D005757
 xref: EFO:1000826;   ICD10CM:K29.4;   ICD9CM:535.1;   NCI:C7405
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
atrophic gastritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp4b ATPase H+/K+ transporting subunit beta ISO RGD PMID:30539573 RGD:14696739 NCBI chr16:76,144,150...76,153,063
Ensembl chr16:76,144,150...76,153,063 		JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:19448967 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Mir146a microRNA 146a exacerbates ISO associated with Helicobacter Infections;miRNA:SNP, haplotype: (rs2910164) (human) RGD PMID:20721625 RGD:126925150 NCBI chr10:27,848,516...27,848,610
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G Mir155 microRNA 155 treatment IEP RGD PMID:27293468 RGD:25671480 NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 severity ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr 1:245,164,586...245,173,225
Ensembl chr 1:245,165,950...245,173,213 		JBrowse link
G Pth parathyroid hormone ISO protein:increased expression:serum (human) RGD PMID:23447517 RGD:7242421 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 susceptibility
severity		 ISO associated with Helicobacter Infections; DNA:SNP:Cds:
associated with Helicobacter Infections; DNA:SNP: :rs12423190 (human
DNA:SNP:intron:rs2301756 (human)
associated with Helicobacter Infections;DNA:SNP:intron: rs2301756(human)		 RGD PMID:17211494 PMID:22788847 PMID:18712962 PMID:19589142 RGD:39128202, RGD:39131289, RGD:39131286, RGD:39128247 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Rel REL proto-oncogene, NF-kB subunit ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr14:97,690,105...97,721,194
Ensembl chr14:97,695,161...97,720,892 		JBrowse link
G RT1-Bb RT1 class II, locus Bb susceptibility ISO DNA:polymorphism (human)
associated with Helicobacter Infections; DNA:polymorphism: :HLA- DQB1*0401(human)		 RGD PMID:20082482 PMID:10616761 RGD:5147582, RGD:36174021 NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO DNA:polymorphism (human) RGD PMID:20082482 RGD:5147582 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18976
    disease of anatomical entity 18260
      gastrointestinal system disease 7093
        gastroenteritis 565
          gastritis 26
            atrophic gastritis 11
Path 2
Term Annotations click to browse term
  disease 18976
    disease of anatomical entity 18260
      Immune & Inflammatory Diseases 5574
        Inflammation 2767
          gastroenteritis 565
            gastritis 26
              atrophic gastritis 11
paths to the root