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Pathways

RGD Video Tutorials

 

RGD Pathway Curation-GOC meeting, 2025



RGD Pathway Curation

This is a presentation from the Gene Ontology Consortium Meeting, 2025. This presentation highlights pathway curation efforts at RGD. It describes the development of pathway diagrams, annotation workflows, and integration with RGD resources.

 

Alliance Webinar





Exploring Variant Data at the Alliance Of Genome Resources

This video is a presentation by Jennifer Smith from the Alliance webinar and covers searching for variants, the variant information on gene and variant detail pages, and viewing variants in JBrowse 2 at the Alliance.

 

RGD Presentations: CTC-RG2023



CTC-RG2023 – Expansion of Rat Expression Data in the Rat Genome Database

This presentation offers an overview of RGD, highlighting its extended expression data content and integration with the broader RGD database ecosystem.



CTC-RG2023 – Enhanced Hybrid Rat Diversity Panel (HRDP) resources at RGD

This presentation introduces the Hybrid Rat Diversity Panel (HRDP), consisting of 35 inbred rat strains, which enrich genetic and phenotypic diversity.



CTC-RG2023 – Rat Genome Database: An Integrated Rat Phenomics and Genomics Data Resource

This video provides an overview of RGD as a phenomics and genomics data resource, integrating sequenced strain variants and genome-edited mutations.



CTC-RG2023 – Upgraded genome browsers at the Rat Genome Database

This video demonstrates JBrowse 2, an innovative genome browser for structural variant and comparative genomics visualization.

 

Overview of RGD Website, Data, and Tools



ISOM2023 – RGD Data and Tools for Translational Research in Otitis Media

This presentation offers a comprehensive overview of RGD as a valuable multispecies resource, focusing on translational research in otitis media.



RGD: PhenoMiner Tool

This video discusses the PhenoMiner Tool, which allows users to query and visualize quantitative phenotype data across rat strains.



RGD: Disease Portals

RGD has numerous disease portals, where relationships between diseases, genes, QTLs, and strains can be explored across species.

 

Rat Reference Sequence Update



Rat Reference mRatBN7.2 Update and Curation

This video covers the new rat reference genome and its updates and curation.

 

Rat Strain Updates



New Strains Available for Use in Research

This video discusses the new strains available in the RGD repository, providing insights into their potential for research.


NHLBI Logo

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.