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Strain Registration

General

Strain: ACI.BN-(D5Mgh17-D5Rat205)/Shul

Symbol:

ACI.BN-(D5Mgh17-D5Rat205)/Shul

Strain:

ACI.BN-(D5Mgh17-D5Rat205)

Substrain:

Shul

RGD ID:

1566445

Citation ID:

RRID:RGD_1566445

Ontology ID:

RS:0001156

Also Known As:

ACI.BN-D5Mgh17:D5Rat205; ACI.BN-(D5Mgh17-D5Rat205)/Shul

Type:

congenic

Available Source:

Not Available

Origination:

Department of Genetics, Cell Biology and Anatomy, University Of Nebraska Medical Center, Omaha, Nebraska

Description:

This congenic strain contains a region of BN/SsNHsd chromosome 5 transferred to the ACI/SegHsd strain background

Last Known Status:

Extinct

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	19,327,036 - 160,071,397	RGD_MAPPER_PIPELINE
mRatBN7.2	5	14,529,225 - 14,529,436	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	5	14,408,903 - 14,409,113	RGD_MAPPER_PIPELINE	Rnor_6.0
Rnor_5.0	5	19,190,627 - 19,190,837	RGD_MAPPER_PIPELINE	Rnor_5.0
RGSC_v3.4	5	14,730,738 - 14,730,949	RGD_MAPPER_PIPELINE	RGSC_v3.4

Congenic Strains

ACI.BN-(D5Mgh17-D5Mgh15)/Shul

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Genetic mapping of Eutr1, a locus controlling E2-induced pyometritis in the Brown Norway rat, to RNO5.	Gould KA, etal., Mamm Genome. 2005 Nov;16(11):854-64. Epub 2005 Nov 11.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Mgh17)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,327,036 - 19,327,247 (+)	Marker Load Pipeline
mRatBN7.2	5	14,529,225 - 14,529,436 (+)	MAPPER
Rnor_6.0	5	14,408,903 - 14,409,113	NCBI
Rnor_5.0	5	19,190,627 - 19,190,837	UniSTS
RGSC_v3.4	5	14,730,738 - 14,730,949	RGD
RGSC_v3.4	5	14,730,739 - 14,730,949	UniSTS
Celera	5	13,900,026 - 13,900,236	UniSTS
RGSC_v3.1	5	14,730,738 - 14,730,949	RGD
RH 2.0 Map	5	73.0	RGD
SHRSP x BN Map	5	5.82	RGD
FHH x ACI Map	5	2.2099	RGD
Cytogenetic Map	5		RGD

Flank 2 / 1 (D5Rat205)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	160,071,170 - 160,071,397 (+)	Marker Load Pipeline
SHRSP x BN Map	5	94.3799	RGD
SHRSP x BN Map	5	94.3799	UniSTS

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_life_disease	contains an increased incidence of estrogen-induced uterine inflammation and infection (pyometritis) compared to the ACI background	1559292

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-12	ACI.BN-(D5Mgh17-D5Rat205)/Shul		ACI.BN-(D5Mgh17-D5Rat205)/Shul		Name updated	68913	APPROVED
2013-08-12	ACI.BN-(D5Mgh17-D5Rat205)/Shul		ACI.BN-(D5Mgh17-D5Rat205)/Shul		Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: ACI.BN-(D5Mgh17-D5Rat205)/Shul