LOC119869425 (U2 spliceosomal RNA) - Rat Genome Database

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Gene: LOC119869425 (U2 spliceosomal RNA) Canis lupus familiaris
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Symbol: LOC119869425 (Ensembl: U2)
Name: U2 spliceosomal RNA
RGD ID: 40922014
Description: ENCODES a pseudogene that exhibits pre-mRNA branch point binding (inferred); INVOLVED IN mRNA branch site recognition (inferred); FOUND IN U2 snRNP (inferred)
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1545,906,051 - 45,906,207 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01546,181,997 - 46,182,153 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1546,181,997 - 46,182,153 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11545,455,172 - 45,455,328 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01545,550,820 - 45,550,976 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01545,813,687 - 45,813,843 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0



Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
U2 snRNP  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
LOC119869425
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1545,906,051 - 45,906,207 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01546,181,997 - 46,182,153 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1546,181,997 - 46,182,153 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11545,455,172 - 45,455,328 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01545,550,820 - 45,550,976 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01545,813,687 - 45,813,843 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
U2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38425,250,545 - 25,250,639 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl425,250,545 - 25,250,639 (+)Ensemblhg38GRCh38
Cytogenetic Map4p15.2NCBI
T2T-CHM13v2.0425,232,355 - 25,232,449 (+)NCBIT2T-CHM13v2.0
Gm25007
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391548,414,704 - 48,414,819 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1548,414,704 - 48,414,836 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381548,551,308 - 48,551,423 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1548,551,308 - 48,551,440 (+)Ensemblmm10GRCm38
Cytogenetic Map15B3.3NCBI


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845023693
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1546,181,997 - 46,182,153 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845013303 Ensembl, ENTREZGENE
NCBI Gene LOC119869425 ENTREZGENE
RNAcentral URS000069DAD5 RNACentral