LOC119873132 (small nucleolar RNA SNORA28) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC119873132 (small nucleolar RNA SNORA28) Canis lupus familiaris
Analyze
Symbol: LOC119873132
Name: small nucleolar RNA SNORA28
RGD ID: 40915860
Description: INVOLVED IN RNA processing (inferred); FOUND IN nucleolus (inferred)
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha870,617,640 - 70,617,763 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0871,381,635 - 71,381,758 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1871,071,130 - 71,071,252 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0871,110,124 - 71,110,247 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,509,946 - 71,510,069 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0



Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)

References

Genomics

Comparative Map Data
LOC119873132
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha870,617,640 - 70,617,763 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0871,381,635 - 71,381,758 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1871,071,130 - 71,071,252 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0871,110,124 - 71,110,247 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,509,946 - 71,510,069 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
SNORA28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,337,849 - 103,337,974 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,337,849 - 103,337,974 (+)Ensemblhg38GRCh38
GRCh3714103,804,186 - 103,804,311 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,873,939 - 102,874,064 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1483,858,363 - 83,858,488 (+)NCBICelera
Cytogenetic Map14q32.32NCBI
HuRef1483,982,381 - 83,982,506 (+)NCBIHuRef
CHM1_114103,741,967 - 103,742,092 (+)NCBICHM1_1
T2T-CHM13v2.01497,573,708 - 97,573,833 (+)NCBIT2T-CHM13v2.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_005330284
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1871,071,130 - 71,071,252 (+)NCBI
RefSeq Acc Id: XR_005363925
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0871,509,946 - 71,510,069 (+)NCBI
RefSeq Acc Id: XR_005393746
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha870,617,640 - 70,617,763 (+)NCBI
RefSeq Acc Id: XR_005398376
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0871,110,124 - 71,110,247 (+)NCBI
RefSeq Acc Id: XR_005431642
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0871,381,635 - 71,381,758 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845018260 ENTREZGENE
Ensembl Transcript ENSCAFT00845032284 ENTREZGENE
NCBI Gene LOC119873132 ENTREZGENE
RNAcentral URS00006D16EE RNACentral