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Gene: LOC119864836 (small nucleolar RNA U3) Canis lupus familiaris

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Symbol:

LOC119864836 (Ensembl: U3)

Name:

small nucleolar RNA U3

RGD ID:

40909988

Description:

INVOLVED IN RNA processing (inferred); FOUND IN nucleolus (inferred)

Type:

pseudo (Ensembl: snoRNA)

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	20	42,784,696 - 42,784,816 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	43,352,391 - 43,352,511 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	43,352,391 - 43,352,511 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	42,592,697 - 42,592,817 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	43,000,210 - 43,000,330 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	43,275,288 - 43,275,408 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

RNA processing (IEA)

Cellular Component

nucleolus (IEA)

References

Genomics

Comparative Map Data

LOC119864836
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	20	42,784,696 - 42,784,816 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	43,352,391 - 43,352,511 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	43,352,391 - 43,352,511 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	42,592,697 - 42,592,817 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	43,000,210 - 43,000,330 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	43,275,288 - 43,275,408 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

U3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	30,304,321 - 30,304,536 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	30,304,321 - 30,304,536 (-)	Ensembl			hg38	GRCh38
Cytogenetic Map	3	p24.1	NCBI
T2T-CHM13v2.0	3	30,306,795 - 30,307,010 (-)	NCBI		T2T-CHM13v2.0

Gm24949
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	95,923,504 - 95,923,718 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	95,923,504 - 95,923,718 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	96,032,678 - 96,032,892 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	96,032,678 - 96,032,892 (+)	Ensembl			mm10	GRCm38
Cytogenetic Map	11	D	NCBI

U3l6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	63,195,560 - 63,195,648 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	63,195,560 - 63,195,648 (-)	Ensembl				GRCr8
mRatBN7.2	13	60,645,399 - 60,645,487 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	60,645,399 - 60,645,487 (-)	Ensembl				mRatBN7.2
Cytogenetic Map	13	q21	NCBI

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


GenBank Nucleotide	AAEX04000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00845022484

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	20	43,352,391 - 43,352,511 (+)	Ensembl

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00845012650	Ensembl, ENTREZGENE
NCBI Gene	LOC119864836	ENTREZGENE
RNAcentral	URS00006AD618	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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