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Gene: CUNH16orf46 (chromosome unknown C16orf46 homolog) Heterocephalus glaber

Analyze

Symbol:

CUNH16orf46 (Ensembl: C16orf46)

Name:

chromosome unknown C16orf46 homolog

RGD ID:

18931744

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

uncharacterized protein C16orf46 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	6,285,316 - 6,288,211 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	6,281,954 - 6,289,142 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:21993625

Genomics

Comparative Map Data

CUNH16orf46
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	6,285,316 - 6,288,211 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	6,281,954 - 6,289,142 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C16orf46
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	81,053,497 - 81,077,238 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	81,053,497 - 81,077,267 (-)	Ensembl			hg38	GRCh38
GRCh37	16	81,087,102 - 81,110,843 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,644,603 - 79,668,373 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	79,652,092 - 79,668,305	NCBI
Celera	16	65,385,500 - 65,409,274 (-)	NCBI		Celera
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	66,843,908 - 66,867,687 (-)	NCBI		HuRef
CHM1_1	16	82,498,474 - 82,522,234 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	87,115,033 - 87,138,779 (-)	NCBI		T2T-CHM13v2.0

1700030J22Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,696,333 - 117,705,741 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	117,696,333 - 117,705,698 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	116,969,594 - 116,978,959 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	116,969,594 - 116,978,959 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	119,493,499 - 119,502,843 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	119,855,576 - 119,864,920 (-)	NCBI		MGSCv36	mm8
Celera	8	121,188,996 - 121,198,332 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	63.41	NCBI

C19h16orf46
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,931,114 - 61,941,517 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	61,931,116 - 61,941,517 (-)	Ensembl				GRCr8
mRatBN7.2	19	45,017,499 - 45,033,453 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	45,022,280 - 45,032,683 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	51,832,036 - 51,842,452 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,485,051 - 52,495,466 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,729,290 - 54,739,705 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	49,508,321 - 49,518,721 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,508,288 - 49,518,721 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	60,299,626 - 60,309,967 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	19	44,295,476 - 44,305,865 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

LOC102030116
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955522	3,845,029 - 3,853,167 (-)	NCBI	ChiLan1.0	ChiLan1.0

C18H16orf46
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	90,805,494 - 90,829,620 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	96,718,168 - 96,738,099 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	61,659,749 - 61,684,534 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	81,094,781 - 81,111,048 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	81,088,460 - 81,098,032 (-)	Ensembl			panPan2	panpan1.1

C5H16orf46
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	70,762,353 - 70,775,341 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	70,765,736 - 70,774,052 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	70,711,103 - 70,724,298 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	71,067,399 - 71,080,383 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	71,070,781 - 71,079,099 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	71,009,677 - 71,022,859 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	70,844,889 - 70,858,073 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	71,322,416 - 71,335,600 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH16orf46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	30,844,331 - 30,877,268 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	28,710,792 - 28,744,811 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	28,712,249 - 28,744,784 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C6H16orf46
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	7,189,556 - 7,207,357 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	7,189,026 - 7,208,669 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C5H16orf46
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,509,242 - 66,531,699 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	66,509,298 - 66,519,426 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	9,304,104 - 9,326,227 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C17H16orf46
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	36,606,008 - 36,616,458 (-)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_004842801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01025691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH168049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000024360 ⟹ ENSHGLP00000024141

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624746	6,285,316 - 6,288,211 (+)	Ensembl

RefSeq Acc Id:

XM_004842801 ⟹ XP_004842858

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624746	6,281,954 - 6,289,142 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_004842858	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EHB03287	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000024141

RefSeq Acc Id:	XP_004842858 ⟸ XM_004842801
- UniProtKB:	G5B1X6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSHGLP00000024141 ⟸ ENSHGLT00000024360

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000017205	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000024360	ENTREZGENE
InterPro	DUF4529	UniProtKB/TrEMBL
KEGG Report	hgl:101724981	UniProtKB/TrEMBL
NCBI Gene	CUNH16orf46	ENTREZGENE
PANTHER	CHROMOSOME 16 OPEN READING FRAME 46	UniProtKB/TrEMBL
	PTHR36869	UniProtKB/TrEMBL
Pfam	DUF4529	UniProtKB/TrEMBL
UniProt	G5B1X6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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