Plppr2 (phospholipid phosphatase related 2) - Rat Genome Database

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Gene: Plppr2 (phospholipid phosphatase related 2) Rattus norvegicus
Analyze
Symbol: Plppr2
Name: phospholipid phosphatase related 2
RGD ID: 1597171
Description: Predicted to enable phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human PLPPR2 (phospholipid phosphatase related 2); INTERACTS WITH (-)-epigallocatechin 3-gallate; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: lipid phosphate phosphatase-related protein type 2; Lppr2; phospholipid phosphatase-related protein type 2; plasticity related protein 4; plasticity-related gene 4; Prg-4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,742,787 - 28,755,555 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,745,639 - 28,755,555 (+)EnsemblGRCr8
mRatBN7.2820,467,071 - 20,479,474 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,467,071 - 20,479,474 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx824,497,880 - 24,510,469 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,793,436 - 22,806,016 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,696,681 - 20,709,077 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,946,787 - 22,959,554 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,947,152 - 22,959,554 (+)Ensemblrn6Rnor6.0
Rnor_5.0823,001,604 - 23,014,338 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,040,658 - 21,050,517 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera821,858,304 - 21,870,682 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14750979   PMID:25943107  


Genomics

Comparative Map Data
Plppr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,742,787 - 28,755,555 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,745,639 - 28,755,555 (+)EnsemblGRCr8
mRatBN7.2820,467,071 - 20,479,474 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,467,071 - 20,479,474 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx824,497,880 - 24,510,469 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,793,436 - 22,806,016 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,696,681 - 20,709,077 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,946,787 - 22,959,554 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,947,152 - 22,959,554 (+)Ensemblrn6Rnor6.0
Rnor_5.0823,001,604 - 23,014,338 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,040,658 - 21,050,517 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera821,858,304 - 21,870,682 (+)NCBICelera
Cytogenetic Map8q13NCBI
PLPPR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,355,432 - 11,365,698 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,355,386 - 11,365,698 (+)Ensemblhg38GRCh38
GRCh371911,466,108 - 11,476,374 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,327,109 - 11,337,372 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1911,360,936 - 11,371,242 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,042,113 - 11,052,420 (+)NCBIHuRef
CHM1_11911,467,084 - 11,477,386 (+)NCBICHM1_1
T2T-CHM13v2.01911,482,410 - 11,492,670 (+)NCBIT2T-CHM13v2.0
Plppr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,848,306 - 21,860,203 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,848,329 - 21,860,203 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38921,935,684 - 21,948,907 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,937,033 - 21,948,907 (+)Ensemblmm10GRCm38
MGSCv37921,742,718 - 21,753,351 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36921,688,676 - 21,699,309 (+)NCBIMGSCv36mm8
Celera919,207,511 - 19,218,335 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.92NCBI
Plppr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,269,769 - 2,279,910 (+)Ensembl
ChiLan1.0NW_0049554952,270,323 - 2,279,688 (+)NCBIChiLan1.0ChiLan1.0
PLPPR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,268,971 - 16,279,745 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,269,566 - 15,278,743 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,902,739 - 10,913,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,614,293 - 11,624,017 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,614,294 - 11,624,017 (+)EnsemblpanPan2panpan1.1
PLPPR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,955,538 - 49,964,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,955,566 - 49,964,416 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2049,829,066 - 49,837,707 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02050,476,257 - 50,484,918 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,476,259 - 50,491,106 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,686,478 - 49,695,212 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,112,923 - 50,121,586 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,355,872 - 50,364,535 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plppr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,895,903 - 208,904,817 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,450,338 - 1,459,106 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,450,314 - 1,458,800 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLPPR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,047,788 - 70,055,778 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1270,047,637 - 70,061,904 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,410,308 - 70,418,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLPPR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,289,234 - 10,300,511 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl610,289,695 - 10,300,920 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660749,593,413 - 9,604,350 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plppr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,158,726 - 3,168,030 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248283,159,313 - 3,168,030 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Plppr2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1818,186,853 - 18,199,368 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plppr2
83 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:85
Interacting mature miRNAs:95
Transcripts:ENSRNOT00000016790
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 162 91 90 59 86 59 6 347 186 11 141 79 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016790   ⟹   ENSRNOP00000016790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,745,639 - 28,755,555 (+)Ensembl
mRatBN7.2 Ensembl820,467,071 - 20,479,474 (+)Ensembl
Rnor_6.0 Ensembl822,947,152 - 22,959,554 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129517   ⟹   ENSRNOP00000101875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,745,639 - 28,755,553 (+)Ensembl
RefSeq Acc Id: NM_001005881   ⟹   NP_001005881
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,743,151 - 28,755,555 (+)NCBI
mRatBN7.2820,467,071 - 20,479,474 (+)NCBI
Rnor_6.0822,947,152 - 22,959,554 (+)NCBI
Rnor_5.0823,001,604 - 23,014,338 (+)NCBI
RGSC_v3.4821,040,658 - 21,050,517 (+)RGD
Celera821,858,304 - 21,870,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242628   ⟹   XP_006242690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,742,787 - 28,755,555 (+)NCBI
mRatBN7.2820,468,669 - 20,479,474 (+)NCBI
Rnor_6.0822,946,789 - 22,959,554 (+)NCBI
Rnor_5.0823,001,604 - 23,014,338 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063265053   ⟹   XP_063121123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,742,787 - 28,755,555 (+)NCBI
RefSeq Acc Id: XM_063265054   ⟹   XP_063121124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,742,787 - 28,755,555 (+)NCBI
RefSeq Acc Id: XM_063265055   ⟹   XP_063121125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,742,787 - 28,755,555 (+)NCBI
RefSeq Acc Id: XM_063265056   ⟹   XP_063121126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,742,787 - 28,755,555 (+)NCBI
RefSeq Acc Id: XM_063265057   ⟹   XP_063121127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,742,787 - 28,755,555 (+)NCBI
RefSeq Acc Id: NP_001005881   ⟸   NM_001005881
- UniProtKB: F1LR33 (UniProtKB/TrEMBL),   A6JNW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242690   ⟸   XM_006242628
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000016790   ⟸   ENSRNOT00000016790
RefSeq Acc Id: XP_063121123   ⟸   XM_063265053
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121124   ⟸   XM_063265054
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063121126   ⟸   XM_063265056
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121125   ⟸   XM_063265055
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063121127   ⟸   XM_063265057
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000101875   ⟸   ENSRNOT00000129517
Protein Domains
Phosphatidic acid phosphatase type 2/haloperoxidase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6W5G4-F1-model_v2 AlphaFold Q6W5G4 1-343 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695794
Promoter ID:EPDNEW_R6319
Type:initiation region
Name:Plppr2_1
Description:phospholipid phosphatase related 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0822,947,439 - 22,947,499EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597171 AgrOrtholog
BioCyc Gene G2FUF-31401 BioCyc
Ensembl Genes ENSRNOG00000012164 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016790 ENTREZGENE
  ENSRNOT00000129517 ENTREZGENE
Gene3D-CATH Phosphatidic acid phosphatase type 2/haloperoxidase UniProtKB/Swiss-Prot
InterPro P_Acid_Pase_2/haloperoxi_sf UniProtKB/Swiss-Prot
  P_Acid_Pase_2/haloperoxidase UniProtKB/Swiss-Prot
  PLPP UniProtKB/Swiss-Prot
NCBI Gene 300443 ENTREZGENE
PANTHER PTHR10165 UniProtKB/Swiss-Prot
  PTHR10165:SF15 UniProtKB/Swiss-Prot
Pfam PAP2 UniProtKB/Swiss-Prot
PhenoGen Plppr2 PhenoGen
RatGTEx ENSRNOG00000012164 RatGTEx
SMART acidPPc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48317 UniProtKB/Swiss-Prot
UniProt A0ABK0LBH9_RAT UniProtKB/TrEMBL
  A6JNW2 ENTREZGENE, UniProtKB/TrEMBL
  F1LR33 ENTREZGENE, UniProtKB/TrEMBL
  PLPR2_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-26 Plppr2  phospholipid phosphatase related 2  Lppr2  lipid phosphate phosphatase-related protein type 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-14 Lppr2  lipid phosphate phosphatase-related protein type 2  Prg-4  plasticity-related gene 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-23 Prg-4  plasticity-related gene 4  Lppr2  lipid phosphate phosphatase-related protein type 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Lppr2  lipid phosphate phosphatase-related protein type 2  PRG-4  plasticity related protein 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 PRG-4  plasticity related protein 4      Symbol and Name status set to provisional 70820 PROVISIONAL