Advanced Search (OLGA)

Gene: Osbpl10 (oxysterol binding protein-like 10) Rattus norvegicus

Analyze

Symbol:

Osbpl10

Name:

oxysterol binding protein-like 10

RGD ID:

1561652

Description:

Predicted to enable cholesterol binding activity and phosphatidylserine binding activity. Predicted to be involved in lipid transport. Predicted to be active in cytosol and membrane. Orthologous to human OSBPL10 (oxysterol binding protein like 10); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; allopurinol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC316039; oxysterol-binding protein-related protein 10; RGD1561652; similar to oxysterol-binding protein-like protein 10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OSBPL10 (oxysterol binding protein like 10)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Osbpl10 (oxysterol binding protein-like 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Osbpl10 (oxysterol binding protein like 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OSBPL10 (oxysterol binding protein like 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OSBPL10 (oxysterol binding protein like 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Osbpl10 (oxysterol binding protein like 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OSBPL10 (oxysterol binding protein like 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OSBPL10 (oxysterol binding protein like 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Osbpl10 (oxysterol binding protein like 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	OSBPL10 (oxysterol binding protein like 10)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Osbpl10 (oxysterol binding protein-like 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	OSH7	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	OSH6	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	osbpl10b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	KES1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	HES1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	osbpl10	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	123,536,818 - 123,796,822 (+)	NCBI		GRCr8
mRatBN7.2	8	114,661,050 - 114,918,664 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	114,660,743 - 114,918,625 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	123,029,722 - 123,303,553 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	123,126,667 - 123,293,562 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	122,339,548 - 122,594,501 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	119,386,782 - 119,670,147 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	113,943,920 - 114,166,802 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-methylcholanthrene (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

allopurinol (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

gentamycin (EXP)

glyphosate (EXP)

iron dichloride (ISO)

levonorgestrel (ISO)

melphalan (ISO)

methoxychlor (EXP)

paclitaxel (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid transport (IEA)

Cellular Component

cytosol (IBA)

membrane (IBA)

Molecular Function

cholesterol binding (IBA,ISO)

phosphatidylserine binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17428193	PMID:23934110

Genomics

Comparative Map Data

Osbpl10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	123,536,818 - 123,796,822 (+)	NCBI		GRCr8
mRatBN7.2	8	114,661,050 - 114,918,664 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	114,660,743 - 114,918,625 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	123,029,722 - 123,303,553 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	123,126,667 - 123,293,562 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	122,339,548 - 122,594,501 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	119,386,782 - 119,670,147 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	113,943,920 - 114,166,802 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

OSBPL10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	31,660,825 - 32,077,692 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	31,657,912 - 32,077,580 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	31,702,317 - 32,022,754 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	31,677,321 - 31,998,242 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	31,677,321 - 31,998,242	NCBI
Celera	3	31,639,913 - 31,959,930 (-)	NCBI		Celera
Cytogenetic Map	3	p23-p22.3	NCBI
HuRef	3	31,644,331 - 31,963,943 (-)	NCBI		HuRef
CHM1_1	3	31,652,356 - 31,973,985 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	31,663,279 - 32,074,807 (-)	NCBI		T2T-CHM13v2.0

Osbpl10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	114,807,531 - 115,062,341 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	114,807,637 - 115,061,293 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	114,978,485 - 115,233,273 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	114,978,569 - 115,232,225 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	114,976,397 - 115,141,341 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	114,915,977 - 115,080,921 (+)	NCBI		MGSCv36	mm8
Celera	9	115,549,999 - 115,705,547 (+)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI
cM Map	9	66.84	NCBI

Osbpl10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	23,084,347 - 23,383,579 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	23,084,618 - 23,383,253 (-)	NCBI	ChiLan1.0	ChiLan1.0

OSBPL10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	31,640,321 - 31,961,330 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	31,645,088 - 31,966,097 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	31,580,852 - 31,902,486 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	31,897,998 - 32,218,518 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	31,899,245 - 32,218,593 (-)	Ensembl	panpan1.1		panPan2

OSBPL10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	12,722,882 - 13,017,527 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	12,722,897 - 13,017,522 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	12,697,704 - 12,992,575 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	13,014,283 - 13,309,863 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	13,014,283 - 13,308,685 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	12,815,011 - 13,110,111 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	12,958,179 - 13,252,745 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	12,970,347 - 13,266,390 (+)	NCBI		UU_Cfam_GSD_1.0

Osbpl10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	189,156,209 - 189,428,101 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	22,295,952 - 22,566,107 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	22,294,782 - 22,566,674 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OSBPL10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	17,651,165 - 18,031,498 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	17,651,168 - 18,032,288 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

OSBPL10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	76,188,077 - 76,508,778 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	76,188,038 - 76,508,022 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	49,532,439 - 49,861,101 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Osbpl10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624788	9,738,658 - 10,034,555 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624788	9,740,395 - 10,034,639 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Osbpl10
2023 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	144
Count of miRNA genes:	113
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000015643
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	100149864	120994388	Rat
1599689	Iddm24	Insulin dependent diabetes mellitus QTL 24	4.72	0.001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	8	112834440	118649220	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat

Markers in Region

D8Rat173

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	114,821,007 - 114,821,151 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	123,197,459 - 123,197,601	NCBI	Rnor6.0
Rnor_5.0	8	122,498,596 - 122,498,738	UniSTS	Rnor5.0
RGSC_v3.4	8	119,573,434 - 119,573,577	RGD	RGSC3.4
RGSC_v3.4	8	119,573,435 - 119,573,577	UniSTS	RGSC3.4
RGSC_v3.1	8	119,593,171 - 119,593,314	RGD
Celera	8	114,065,767 - 114,065,909	UniSTS
SHRSP x BN Map	8	76.2399	RGD
SHRSP x BN Map	8	76.2399	UniSTS
Cytogenetic Map	8	q32	UniSTS

D8Got326

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	114,662,288 - 114,662,415 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	123,032,000 - 123,032,126	NCBI	Rnor6.0
Rnor_5.0	8	122,340,706 - 122,340,832	UniSTS	Rnor5.0
RGSC_v3.4	8	119,387,876 - 119,388,002	UniSTS	RGSC3.4
Celera	8	113,908,496 - 113,908,622	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH130828

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	114,893,573 - 114,893,765 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	123,268,816 - 123,269,007	NCBI	Rnor6.0
Rnor_5.0	8	122,569,744 - 122,569,935	UniSTS	Rnor5.0
RGSC_v3.4	8	119,646,188 - 119,646,379	UniSTS	RGSC3.4
Celera	8	114,132,066 - 114,132,257	UniSTS
RH 3.4 Map	8	1208.5	UniSTS
Cytogenetic Map	8	q32	UniSTS

BM383863

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	114,790,730 - 114,790,881 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	123,168,187 - 123,168,337	NCBI	Rnor6.0
Rnor_5.0	8	122,468,923 - 122,469,073	UniSTS	Rnor5.0
RGSC_v3.4	8	119,543,843 - 119,543,993	UniSTS	RGSC3.4
Celera	8	114,035,580 - 114,035,730	UniSTS
RH 3.4 Map	8	1210.79	UniSTS
Cytogenetic Map	8	q32	UniSTS

BF410679

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	114,866,131 - 114,866,245 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	123,242,325 - 123,242,438	NCBI	Rnor6.0
Rnor_5.0	8	122,543,253 - 122,543,366	UniSTS	Rnor5.0
RGSC_v3.4	8	119,619,063 - 119,619,176	UniSTS	RGSC3.4
Celera	8	114,109,591 - 114,109,704	UniSTS
RH 3.4 Map	6	743.6	UniSTS
Cytogenetic Map	8	q32	UniSTS

stSG598731

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	114,848,415 - 114,849,530 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	123,224,754 - 123,225,866	NCBI	Rnor6.0
Rnor_5.0	8	122,525,682 - 122,526,794	UniSTS	Rnor5.0
RGSC_v3.4	8	119,601,345 - 119,602,457	UniSTS	RGSC3.4
RGSC_v3.4	1	261,657,931 - 261,658,160	UniSTS	RGSC3.4
Celera	8	114,092,292 - 114,093,404	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015643 ⟹ ENSRNOP00000015643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	114,660,743 - 114,918,625 (+)	Ensembl
Rnor_6.0 Ensembl	8	123,126,667 - 123,293,562 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102477 ⟹ ENSRNOP00000091734

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	114,772,622 - 114,903,440 (+)	Ensembl

RefSeq Acc Id:

NM_001427692 ⟹ NP_001414621

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,539,235 - 123,796,822 (+)	NCBI

RefSeq Acc Id:

XM_017596141 ⟹ XP_017451630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,536,818 - 123,795,853 (+)	NCBI
mRatBN7.2	8	114,661,050 - 114,918,663 (+)	NCBI
Rnor_6.0	8	123,029,722 - 123,303,553 (+)	NCBI

Sequence:

show sequence

TAAAGGAGAGGTCCCAGCTTCTCAGAGCTCTAATTTTAGAAACACCCAGATTGCATTGAATATT
TATATCCACGACGGTAACTGGTGGGCTGGAGAGAGCCCTCTATCTCTCTGCCTTTGCTGAAGAG
CAAGACAGATTGAGAAGTGCTGAGTGCGTGGGTGGGCGAAAGAAGTTTCTTGGCCAACAGTGGA
GGCTGTTGTGTGTGTGTGTCTTCTCACTTGCCCTCTGGTTTGGGCCCTTCTGGTCCTCGGGTGC
TCAGTCTCCAGCCGCAGTCTTGACTCCTCACATTTATCTGTGCCCATCACCCCTGGGCTCAGGG
TGAAATGCGTGTCGTGTCACCCCTAGGCGCAGGGTGAAGAGAGTGTGTGAGATCAGGAGAGCAC
TCACTGGAAGGCATCTAGTCCTAGCCCTGGTGTTCGCCATGCATCCATCCTAACTCTGTCTGAC
TTGTGGAAACGGCCCCAGCAGACAGCCTGCTCACCTGGGAGAGTCACCTGCTGCCCCTTCCTTT
CCGCTTTCAAACCCAAGGGAGAGCCCCGAGGGCCTCGCTGCTCTGTTTCTAGGCTCTCCCAGTG
AAGCTAATTTTCAGGTGACTGTGTACGTGCCTGGCCCAGGCTCCTGTGCGCCGACACACCGAGA
GGGAGCGTGCTGGTGTCTGGGACCGGGCGGGACCATATCCGGGTGGACCGGGTGGGTAGGGCCA
TCCCTCCCCCCTGGTCTCGAGGTGGGTTGGGGGTGGAGAGAAGGGCGTGCGGAGATTTCCCTGT
CAGGATCCAAGTCCGGGGCAACAAAAGGCTAGGGTGCAGGGGGCCGATGTAGGGCGTACCCACC
CTGTCTGCCAGGCCCGCCCCAGGAGCATCCCTAGCCCGGGTCCCCAAGCAACTGCAAGGGACCA
GGAGCTGGAGGAGGAGGAGGGCGAGAAGTGGCTGGAGGGCGGGGCCGGGCCCTGGTCGAGGCGG
GAGGAGGGGCGGCCGCAGCTGCATCCAGCCCGGCTGGCTTCCTTCCCAGCCCTCTTTTCCCTCC
TCCTCTTCTTCCTCCTGTATGAGTCAGGCATTTCCCGGGGAATCGGAGCAGCCACGCGCGGCCC
GGGAGCCCGGAGCTGCAGCGGCGGCGGCGGCAGCTGAGGCGGCGGCGGCCGGGCTGCCACCTCG
GCGGCCACCCGCTCCCCGGGCGCGCAGCGATCATGGAGAGGGCGGCCCAGAGCGCAGACGGCGG
CGGCGGCGGGGGCAGCAACAGCAGCAGCCGTAGCAGCAGCCGCGCCACCTCGGCGGGCTCCTCG
CCCTCCTGCTCCCTGGCTGGCCGAGGGGTGGCCAGCCGCTCTGGGGCCGCGGGACTGGGCGGCG
GGGGCAGCCGCAGCAGTCCCGGTTCGGTGGCCGCTAGCCCGTCCGGAGGAGGCGGCCGCAGGAG
GGAGCCGGCGCTCGAGGGCGTGCTCAGCAAATACACCAACCTCCTCCAGGGCTGGCAAAACAGG
TACTTTGTGCTGGATTTCGAGGCTGGCCTCCTGCAGTATTTTGTGAATGAGCAGAGCAAGCACC
AGAAGCCCCGAGGAGTCCTGTCTTTGTCTGGAGCCATCGTGTCCCTGAGTGACGAAGCTCCCCA
CATGCTGGTCGTGTACTCTGCCAACGGAGAGATGTACAAGCTGAGAGCTGCTGACTCCAGGGAG
AAGCAGTTGTGGGTGACTCAGCTTCGAGCGTGTGCCAAGTACCACATGGAGACCAGTTCCAAGA
TGATGAACCAGGTGGAAGGCCAGCAGAAGAACCTCGTGCATGCCATCGAGTCCCTGCCAGGCTC
AGGCCCCCTCACTGCCTTGGACCAGGACCTGCTTCTACTGAAGGCTACCTCCGCCGCCACCCTC
AGCTGTCTCGGGGAGTGCCTCACCCTGCTCCAGCAGAGCGTGCGCCAGGCTGGCCCACCCAGCC
ACAAGCCAGGAGCCTCAGAGTCCATCCTGGGATGGCATGGGCCCACGTCACAGTCCACAGACCA
ACTGAAAAATGGGACCCTTGGCTCTCTGCCCTCAGCCAGTGCCAACATAACCTGGGCGATTCTA
CCGAACTCGGCCGAAGAGGAGCACAGCTCACAGCCGGAGCCAGAGCCAGACTCAGGCCCTGAAC
TGGTTTTGTCTGAGGAAGAACAGAGTGATCACGAGGACAAGGGAGAGGTGGAGCCGGGCACCGT
GGAGGACCAGCACAGTGTAATCCTCCACCTTATCTCACAGCTCAAGCTGGGCATGGACTTAACC
AAGGTGGTGCTCCCCACATTCATTCTGGAGAAGCGGTCCTTGCTGGAGATGTATGCAGACTTTA
TGGCACACCCTGACCTGCTGCTGGCCATCACTGCCGGGGCGACGCCAGAGGAGAGAGTCATTAG
CTTCGTGGAGTATTATCTTACGGCCTTCCATGAGGGGCGCAAAGGCACCCTGGCCAAGAAGCCC
TACAACCCCATCATCGGCGAGACCTTTCACTGCTCCTGGGAGGTTCCCAAGGACAGAGTCAAGT
CGAAGTGGACTTCCCCCCACCCTCCCATTAGTTGTCACGAGCATCCGATGGCCGATGACCCTTC
TAAAAGCTATAAGCTCAGGTTTGTGGCTGAGCAGGTATCCCATCATCCGCCCATCTCCTGCTTC
TACTGTGAGTGCAAGGAGAAGAGACTGTGTGTCAACACTCACGTATGGACCAAAAGCAAGTTCA
TGGGCATGTCCGTGGGGGTCTCTATGATAGGGGAAGGTGTGCTTCGGCTCCTGGACCACGGGGA
AGAATACGTCTTCACGCTGCCCAGTGCCTACGCCCGCTCCATCCTCACTGTCCCATGGGTGGAG
CTTGGAGGGAAGGTGAACATCAGCTGTGCCAAGACTGGGTACTCTGCCACGGTGACATTCCACA
CGAAGCCCTTCTATGGCGGGAAGGTCCACAGGGTCACAGCTGAAGTGAAGCACAACCCCACCAA
CACCATCGTCTGCAAAGCGCACGGGGAGTGGAACGGCACCTTGGAGTTCACCTACAGCAACGGG
GAGACCAAAGTCATCGACACGACCACCCTGCCTGTGTATCCTAAGAAGCTTAGACCTCTGGAGA
AGCAGGGGCCCATGGAGTCCAGGAACCTCTGGCAGGAAGTCACCCACTACCTGAGGCTTGGGGA
CATTGACGCAGCCACAGAGCAGAAGCGCCGTCTAGAGGAGAAGCAGAGAACGGAGGAAAGGAAA
CGGGAGACCCTTCGCACACCATGGCGACCCAAGTACTTCATCCCGGAGGGCGATGGCTGGGTGT
ACTTCAACCCCCTTTGGAAGACACACTGATGGGCAGAGGTGCAGTGCTTTCCCCGTGATAGGCC
TGGTTTTGTAGGAATTAAAGTGGTACAGTATCAAGATTCTGTTGGTATTTGCTGAAATCTCATT
AGCATCCAAGCCAGAGAAAGGGGTTTCACCCTGTGAAACATGCTCCTCCAGATCCTGCCTAAGG
ATTTTATTCAAGAGCAGCCGAGGCACATGGGCACCCTACACCCGCCGAGGCTGACCTGGGTAAT
CTTGAGCTCCTTTTTGTTCACGAGATTCGGTGTTCTTTCTCACGTTGCCACAGTTTTGCCAGCT
CATGTCCCAATGCAGGCTGAAGGGGCACAGCCGGTTGAAGTCCCTGTCTGAAAAAGGAGCTCGA
TCCTGGCAGAAGGGTGAGTGGCCACCCTTTGCTGATACTTGTTCTGATCCAAGTCCAAGGTTGT
CTGTCCACATCCTGGAAAGAGCAAGTTGAACAAGAGGACCGGGAGTCACTGGAGGCTGATATGG
AGCCTTCTAGAAGGGAGTGACTCCTGAGGAATTGGAGCCAGGCCCACCAGGTGGTTTTATCCAG
TCTTTCTGATACTTCTCATGCCCAGATCATGAGATCCTGTGTTCTTCACAGCAGAAAAGAAATC
ACACAATCATGACAAGGGCTCTGGAGGGTCAATTCACGCATGCGTACACTACACGGACCACCAC
TGCCTCATATCTAGTTGGGGAAAGAGAACAAAAAGTCTTATTTCTTTTTCTTAATTTAAACCCA
AGCTGCCAGAAAGCCTCTGTAAGTAGGACAGCCATGAGCCCCCACTGTCCCAGAAGAGTTCGTT
CGTCTTCAGCCTTCACATAGGTCAAACACGGACCAAACAAAATCGAGAAAAAGAAAGTCTAATT
TGATTTTTGCTCAGTGCTTAATTTTTTACCATACCACCCCAGTGATATTTATAAAATTCAGTAG
CATGAATGCTTCTCTGTAGTAATACTAATTTTGTGCCTTTTGTCCGCTTTCTTAAGACCAACTG
TTGATACTTTGTAGACATTAGACAAATATATTTCGATTAAATACTCTTGTGTCTTGTGTGTGTT
ATTTTTAGGGATTTAAAAGTTCTGATCAGTGGCTCAATCTCAAATCTTCTTGCTTAGGTACTAA
TAACAACCATAACTATATTTAATTTTTTTTTAAAAAGATGTATTTTGTGTGTGCTTGTAAGTGC
AGAGGGTGTGGGATCTCTTGGAGCCAGAGTCGCCAGTGATCACGGACAGAGCTGCTGATATGGA
TGCAGACAGTTGATCACCACAGTCTTTTCAAGAGCTTAGACTCTCTTAACCACTGAGCTGTGTC
TCTAGTCCTCAACCCTGTTTGAAATACAGGAAAGCAAATGCTTGGGTCCTGGGTTTAGGGCCAA
TCCAAGCATGACAATTGAGACACCATCTCTAACAACAGTCCTGGGAGAACTGGAAGCCTAGACA
AAGAAAGCAAATTCCTAGAAACACATCCTACTGAGAGTGAGTCATGGACTAAGAAAGCAGAATA
GATCTATAAATAGTAAGGAGATTGGATCAGTCACTTAAAATCTCCCAACCAAAAAAATGCCAGG
ACCAGATGGCCTTAGATGAATCCTACCAAACACTGAGAGTTATGCCATCCATTCTGGATTGGCC
TAGTTTGCCAGATGATGCCCAATGCCAAAGCAAGGACAGATTTAAAAAGTCACTAGCATGCTGT
ATAAATATTGGTTCAAATTTTCTCAAATACTAGTGCAGCGAATTCCACAGCACATTTAAAGGAT
TGTGCATGACAACAATGAAGTGTACTCAGACAGCAAAGGCGGTTGAATGCACGATGCATGAAAA
TATCAGCACAGCATACCACGTTAATAAGGAGGCAAGCAACAGGCATCTGAACCCATGCAGGAGG
AGCATTTGACAAGATTCAGTACCCGTTCATGGCAAAACAAAACAAAACAAACAAACAACAACAA
AAAAAACCAACTCTCCCCAAACCCAATGCATTAAGTCTATGTAAACCACCACAAAGATTACGAA
GATGAGAAGCTAGAAGCTCTCCCTCCATGCCTGAGAACAAAGGTTAAGGTTGCTTATGTCACCG
CCACTGACACTAAAGTTTTAAGTAGTATGATTAGGTAAGGACAAGACAGATGTGTTTCAGCAGA
ATGGACATTCTCTTATAGTTGGTACTATCATGTTGTCTAGAAAATCCAAGACCACACAAAAAAA
ATTCCATGAAGTAGGTCACACTTTCTTGCTTTGACTGCCTTCCTTCTCTCCCTTGCAAAGTGGA
CTTTTGAAAATTGCTACCTTCTGCATGCTGGCTCCACATCTGAGCAGGGGGCCCAGTCCCTCCT
CTCAGCCAGGCGCACGCACAGCCTGGCAGCTCTTCTTGGGTTTGTATATTCTGTTTTAAAATGT
GATTTCTGGGGCCGGAGAGATGATCCAGTGGGTCAGAGCACTTATGCTTCTGCAGAGGACCCAA
ACTCAGTTTCCAGCGCCCCAATAGGTGTCTCACAGCCACTGAGAGCTCCAGCTCCAGGGCACCT
GACTCCCTCTGTGGGCAAGGGCCTCACCACCTCCTCAATTGCCCACCAGCACCACCACACAGAC
GCATGGTAAATCTTAATATTCCCTGGTAAATCTTAAAATTCCCTGAAATTTCTCTCCCAGGTCT
CAGAATCTTTGAAGCTGTATTATTCTCCCCACAATCTTCTACACCCTTCAACTCTGGACCTGGT
GCGAACCCCAGGGCAGCCTCATGAGCACTGCCTGCACCTTCCAGAGGTTGCCCAGCCTTACCTG
AGGGAATAAGAGGCAGAATGGAGCCTGTTCCCTAGGCAGCTCCCAACAGAGCTCTGTCTTCCAC
CTCCTGGCGGTGGGATGTCACTGGACTGTCACACACTGCAGGAGGGAAGGTCTGGGCTCTTCTG
TTGGCTCACTCACTGTCCCTGCTCTTGGTGCAGGTTAGAGTGGTCAGTGGAATGGTGTTGACCA
CAGTCTGGCAAAACATTCTCTTCACTTCCCAAGATCCCACTCACACTAAGTCTCCATCCCTTTT
TCTGCTCTTCTTCACTGAGCACTGTCAGCCCTTGGGTGTGTGGTCCTCTTTCCTCTGTGGATGC
TGCAAGATCCTGAAATGATACACGCTGGTTTACCTGCCTCGGGCCTTAACCACATGCTATACAT
ATCCTCGCTGGGCTCCTTAACTCCAATTGTGTTTTGGCTATTTTTCTTTAAAGAAACTTTTCCC
CTTTATGTGAGCCCCAATTATCAATTACTCTATTTCTTTTTACATGCATATGTGTGTGCATGTC
CATGTATTAGCCCCAGGCTGATGTTGGGAATCTCCTCCATCACTCCTTCAAATTCTCCTTTGGG
GAAGGCTCTCTTAGTCACACCTAGAACTTCTGAAGCCAAAGCTGCTGGAGGTAACAGGTGGTGG
ACACTCCTATGGGTTCTAGGGATCTGAACCCCAGTTTTCTTCTTTTGCAGCAGGCCTTATAACT
GCTGGGCCATCTTCTCAGCCCTATCTTGTCTACTTTTGACAACTTCGAAGAATGTTGGATGTAA
CTAGGGTACGTTTATCTTCAAATCACACTAAGGTCAAGCCATTTGAATCCCCACCAATATGGGG
CCATTTTTGGACATTTACCAATGTTTACTTTAGTGAGCCTGGTGGCTACTACATTTGTTTCTAT
TTGCCATTTTGATTTCTTCTGTCAAGACTTCATTATGATCTTCTATGTGTCTTCCTTATACTTC
TTAATGTATTTGGTACAAGTTCCTTCATCAGATGCAGGGCAGATGATGACAGGCCTTTGTTTTG
TCAAGATGCCAGGACATGCCTGTGGGCCACTGAACAGAGGCAGAATTTGCACGAGCTGACTTAG
GGCTTCAGTGTCAGAATGGGGTGGTTTAAGGACACATAACCAGATCAGTAGAGAAATCACTTTT
TGATCAGTTTCAACATTGAGCCAATTAAATGGAAGAAACAAGTGAATAGTGGTGATGAACTGAA
GTGAAACTAATTAAGTCCTGCAGAAATCAGCACACACCCAGTACGATGGGAGATGTTACATAAT
GGGAGACAGAAGCTGGCAGGCTTGCCTCGTGGCTAGGTTTCCCTGAACCCTACTTGCATCTTCC
TTGGTGAGAGGGCTTCAGACTCCAGTTAGCCTCACTGCAATGTTTGTTACTGTGCTTTTCTTCA
CAGGGCTAGAATAGCGCCCTTTTTCTAAAACTTTCCCCTCAGACCTTAATAGGCCTGAGCTTCT
GATCCAGGCTAATCTTTGCCAACGGAGGATCATATGATGAGGAGGATCATACGGTGGTGAGTCA
TGGTGGCTTTTAACAGCGAGGACAGCAGAACTTACCAAGAACATTGGCTAGTCACTCTGACTAC
CCGTACTACCTTCAGTTTTTGGTTTGGTCCTCAACCTTTTACCAAAGACATCTGAACAGAGCAG
ACACCTGATATTTCGATCCAAATGCCTCCAGGTTGCTTTCAGAACTGGAAACAAGGCCCCGAAT
GTGTCCTACTTTCCGAGAAGGATTCTGAGACTGTGATAGTGTTCAGGAACATAACTTCGGTAGT
GTCCATTAAACTAAGGCTGTGGAGATGTAAGAAACAGGTGCTACGTGTGTTCTGGGATCCAAAG
GGACAATGTGTCATAAGAGTCTCGTTCTGACAGCAGGAGCCTAGAGTATGGACCAAGAGCCCTG
CAAAGATGGCTGGAAAATCTGTATAGAAGAATCCTATTGCAAGATGAACACAGGCCAGTATACC
AGAAGAAATACACATTCTGAGATAAAGCCAGCATTTGGGGCTATTTTCCTTGGAAATTGGCAGA
GGCCAAAGAGCTGTTCATACCTTTATAGGAGAGAAACAATGTTTATACCCAAGTATCTGGCTGA
AGTCTTTGCACAACATTACCATGGGAGCAATGATAGTAGGCCAGAATTGTATATAACATTTAAT
CCTTAAACTGGGTTCAGGTGATTCTGGTTTGTCAAATTTCCCTACTTCTCTGGAAGATAAACAA
TCTCCTCCAAAGTAAAAACAAGAGCCCTGGCCTACACTTACCCATACAGCTTCTTAATATAATG
CTTCTACCACCAAAACCCCATTTACATAGATGAGACCATAGACAACAACTAACAAGAGAAAAGC
CCATGCAACAGAACAGAGACTCTCTAGGTACTAGGAGACACAACTTAAAACCATGCTCACTGTT
AGTTATCTATGCATCCTGTCACATCACGGCTGACAAGACTGTTCAGCAGGTATCTAAAGGCGCT
TGCTGCTAAGCTCAAATTTGATATTCAGCACACAAAGTACGAGACCTGATTCAAGTTGTTGTGA
TACCTGTATGTCGAAGTCCCAGTCCTTAAAAAACTCAAATGTTTAAAAAGCTTTAAGTCTTTTA
ACTATGGGTTTCTATTTTTAAAAAAAGTTAAATACTTAGTTCAAGAGAACCAGGGAAACTGCAA
CCAGATCAAAGCAAACCCTAAATCCAACTGTATGAACAGCTCAGTGTTTGACATTTGGGACTCA
CTCACGATCTGGGCTCCAAAGGGCTTGGGTAACCCCTCTCCCCATCGCTCTGGTTTTGTCGTGA
GCATCACACGCAGGTTACCCTATATGCTCAGGCATACTCAACGCCAGCTACTGTCCACATTGTT
ACCCTATGGGCTTGACAATTCCAACTGCTGGAGTCCCCATCACAACTGAGGCTGCACCTTTAAT
GGTCTCCTGGCTTCTCTTTGGGGACTCCAACTGTGCTGCATGGTGCTAAGCTTCAGCTTTTCTC
CATGACCGCTGCAATCCTGGGGTCTCCGCTGCAATTGAAGCTGCACTATCACCAATGGCCTCTC
CTAGTGCTCTCAGCCACTATGATGACCCTTTTATGCCTTCAATACTAGTACCACATGGGAGACC
CTTATACATTACCAAGTTTGGCCACCGATTGAGATGGAGCCTTGGCCCACTCTGGAACATCGCT
TTCTGGGTACTAACCCTGAAAAAATACTTTCCATAAGATTTTACCTCATTGATGCTAGTCTCTT
ATGAATCAGAGAGGATTCTTTAGCCCAAGCTGATCAGAAACCACAGATTCTTAATTCAAATATA
TCGCCTGTACAGCCCTGATTGTTTTTGCTTCCTCTGAAACTTACAATCCAGGCTTCTATAGCCT
GGATTTCTCTTTACACTCTTAATCTTCAGAACTCCCACATGAGTAGCTCAAAGGCTTTTCCAGC
CCAACGTTTCAAACAATTCCACAATCCTCCCAAGACATGGTCAGCTGTGTCACAGCAGTAGCCC
ACTGTCTGGCACCAATTTCTGACCTAGTCTGCTTTCTGTTGCTGTGATAAAATACTAACAAAAA
AGGAAGGTTAGAATTCATCATTGCGAGACGACAAGACAGGAACAAGGATGCTGCTTCTACAGCC
CAGGACCACTTTTCCAGGGCAGTGCTGCCTACAGCGGGCTGGACCGTCCTCCATCAATCAGTAG
TGGCTCACAGGCATGTTCATATGACACTGTGATAAAGGCGTCTTCTCACTTGAGGTTCCTCTCT
CCAGGTGACTCCAGTTTGTGCCAGGTTGACAAAAAGCTGACCAGCATACTCACACAGACATAAA
TCAAACATTTATAACCATCATAGTGACAAATGCTTGTAATCCCAGCACTCAAAAGCCTAATGCA
GGCCCCGAGTTCATGACAACTAGACTAGAGAGTAAGACCCTCTGCCTAACACATACATATCTCA
AGATAAAATGTTCACGATTCTGACCAAAGGTCTCTGCAGAGATTATACTCAATGGCAAATGACC
ACCAGCTTCCCTGAGAGGAGCCAGGCAACGCAGTGCAAACCAATTACAAGGGAGAAAACAAACC
CACCCCCCGGGATGCCAGAACACCGAGGACAAGGGCAAGTAAAACATTATGTAAGAACACATGC
TTCTATATTCTAATAAGGAGATATTAGGGGTTTATGACTTAGTTACCAAAAATCACACACTAGG
ACACCAGCTAACAGAAGCCACTCTTTTGAGGCAGCAGAGTGTCGTGTAGCTCAGGGTTGGCCTT
GAACTCACTATGAAGCTGAGGATGAACTTACCTCCTGCATCAACTTCCCAAGTGCTGGGATTAC
AAATGTGTTAGCCGTCATGGCTAAAATATAAGGTTTAAATCTACATACACACCTATACTTATGT
GTCTGGTCTGTGTTTGTGTACATGTTTGAGTAGAGGCCAGAGAGGGTGTCAGACTCCTCGGAGC
TGCAGTTACACCACCCAAAAGCAGGTCCTTTGCAAGAGCAGCAAGCATCCTTAACCTCCGAGTT
ATCACCACAGCCCCTAAAATAGAAACTTTAGGCCTATAAGCCAGGACAATAACCAATAAACAGG
CACTTCACAATGTACTCAACAAGGGGATCCTGGGTAGAAGGCAAAGGAGAACAGGCAGAGTCAA
AGGAAGGACAGGCACGGTGTTGGTGGTTTTACAAAAAGGTTTTTTTTTAATCTTCTAGCATTAC
ATATTTATGTATCTATTGTGTATGTTTTGGGGTGGGCATGTGTGGAGACCAGAGGACAAACTGG
AGGAGTCTGGTCTCTCCTTCCGCTATGCGCATCCCAGGGGTTTCAGGCTTGCCAGCAAGCACCT
TATCCATCAAGCCAGCTCTTCAGCCCATGAAAAGAGCTTTTTAAACAAGGTGCAGACAACCACA
GACATACATAAGATCAAAGAGATTAATCCCTAACAGCCTGTAAGCTGAGTATTGATGACCGCAC
AGATGAGATACATAATGAACTTTCCAGAGACAAAACAGTAGAGCATGAACCAGAACATACACCC
CAGAAAAAAATGCATTTCCAAATGGCCTACACTTTTCTGGTGAGCCAAGGAAGACAAAGTAAAG
AAAAGGAATCATTATCTGTTCTCACTGTGCTTGGTGCCGTAGTTAGTAATCTCGTCACGGGAGG
CTGAGTAAGAGGATCATGGCCAAGAGTTCTGGGCCAGCCAGAGGGCTGGAGGCAAGGAAGAAGG
TAAGAGAAAAAGTGAAAGGCTGCTGAGAACATGGAGGCATCAAAAGTGACTTTATCCCGAGACT
CCCAACTGTGGGCGAAAGCTGAGAGAAATGTTTATTTTCTTGGCATTATTTGCAAATGTCCATC
AATAAACCAACAAGAAAATGGAGGTGTTTGAACAAGCTGCGGAGGGACGGAGTATTAAATATTG
ATGAAAGCCGAAAAACTGCCTAGGCAAAGTCTGTACGCTCCAGGACTCCACTTCCACAGCCCCG
AGAGTAGGTGCACCCAACCACACTAAGAGGAAACTACTGAGGTGGCAGTGGCCGGGAGGACACA
GGAGCAGCTTCAGGAATGCTGCTGCCTCTCCTGGAGTGATCCTGGCCGAGGATGTAAATCCTCC
TCCTCTTTAGTTAACTCAAATGGCATACAGTCATTTTCATTTCTGTGTCAGTCCTGGCACTTCA
TTAGTTTGCTTACTTGGTCTTTCCACTGAACTGCATGTCCAGCTATCTCCTCACCTCAACAGGG
TTAAGGCAAGCAAGGCAAACAGACAAAAACCATGAGAAGCAGCAGCCAGATGAAAAATGGTGGC
TCAGTTGTCTAATGCTGTGTGTACACTCAAGAGCACAGCATATGGGGAAGCAGAGCGCACGCCA
GCTGCTTCAGTCACACCCTACCCTAGTTTTCCAGCTCTTTCTGAACCAGAAGCTCAACAATTCA
GTTACAATGGTTGGCCAGTGAGCTTGAGGGGTCCTCCTGTCTCTTCTCTGCCCTTAGTACACAG
GTCACAGCTTGGTGGTGTAACTAAGGCCTGATGACCAGCACTTTACCAACTGAGTTATCTCCCT
AGCCCCGATCTATGGACTTCAGAGCAAGTTTTGGCTAGTGGTAGTGTCCAACCAGTGAGCAACA
ATGCCAAGGCTGTAATAATTTTCCAAGAGTGAGCAGCAGCTCCAGATCCTGTGGTCGCTTGACT
AGCAACACAGTAGTACAGACGATGTTTTCATGTCCAGTCTCGGGGCCTCCTGGTCACCACTCAG
GCACTCAGAATGCCAGCACTGTAACTTAAGCAGGGTAACAATGTCAGTGTGGAAGCTTAAGTGG
CCTAGTTGATATTATACCGGGTGCCATTTGCCACGGAATTTCTCTGGAAAGCTTCAAGGTCATG
ATGCTGAAAATTCCACTGTGAAATTTAGGGTTAGTGATCATACATAAAATGAATTTAGATTCGA
AACAAGCTTCTAAGCTCAGCAGCTGACACTCCGGGTGTGGTAAAACCACCACCTTGTCACTTCC
CCACACCAGCACTGTGAGCTTCACAAACACCAGGCCTCAAACCAAACTTGTTCCCCAACCTGAA
AAAGGTGCAGGCATGGCAGGAAAATGGCACTCAACACTGAGCTCTGCCATCTCGGAGCCCCATG
GAATGGGTACCATGACAGCCTGGCCTGCCTTTCTTTCCATTGCCGGACCCCCAAAAAGTCAAAA
CGAGGTACAGTTTATTCTGAGTAAAAAGGTAATATTTAAAAACATGTTTTGAACAAACTTATTT
TTCCACATATTTGGCTAAAACCTTTATAAGGTGAGTAGAGAGGGAAGAATGGGGTCAGAACTCT
GCACTTCTTTCAAAAACAAGGTCTGCAAAAGACAAGGCTTAACACAAAATTTGAATTAACTTTA
TTTCCCTTATGGTCAATAACGTCTCTGCATTGAATTGTAAAGCAAAGTAAGATAAAATCCCCCA
AATGACAAGGTATCAGAAATCCAGATTTAGTTACAATTTATTTGTGAAAATGTTCAGCTTTTTT
TTTTTTTTTCTTAATATTGGTCTGTAAAAGAACCATCATCTGGATCAAGAATGAATTCTATAAA
TCAAAGAATATTCTACACCTTGGAAAAGGAAGTCAGCAGTAACATTCTCACGGAGCGTTGTAAA
TTACGGTTTCTTCATAAAAGGTACATACTGTTCTGTACTTTCCCACCAAAGCAGTGGTGTGGTG
TGTAAAAAGTTCTCCTGTGGCAGGAAACCTCTCTCTCACTTTACTAAACAACTGGATAAAGTTT
TCAAGTCTGTATAAAGTTGCCTATAAGCTGGAAAATGAACAGGTTCAATCTCCATTTATATTTT
AGTGCATCTTTTGACAATTGTCACATTTGTAATAAAAGTAAGAAAATGCCTATATAGCACTAAA
GAGTGTTTCATCAAATGCTTAAGGTATCAAAACATGAAGCAGTGAACAGAAATCATCGTGATGA
ACAAAACTGGTATAAAATGAGGAAAATCCAGGCAAAGTTTACAAATCCTTTGTCACTGTGTAGT
CACAGAAATGAACTCTGGATGCCTGTCCACTGTAAGGGCTTTCCCCCTTAATCATCTGCGTGGA
AACACGGAGCCAACCTAAGTACTAAGGTAATAGCCATCCTGGCCAGCAACATCCTGTGTGTGCT
CGCCATGATTCCCAAAGGATATAAATTTAGCCCTTGAATGAAGAATGCATGAAATCTGCTCTGT
AAGTACCTGGTGAAGACACCTGCTAACCGCAGTGCGGATGCCTGAACACAAACATCTATCTATC
AGCTAACTACGCAAGGCCCACCGTCAGCAGCAGCTGCTTACAGCGGCAGTGAGCGACAAAGTGG
ACATTTGATGAAACATTCTTCACACCGGAGAAACAG

hide sequence

RefSeq Acc Id:

XM_039082690 ⟹ XP_038938618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,536,818 - 123,744,236 (+)	NCBI
mRatBN7.2	8	114,661,050 - 114,870,067 (+)	NCBI

RefSeq Acc Id:

XM_063265640 ⟹ XP_063121710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,536,818 - 123,788,654 (+)	NCBI

RefSeq Acc Id:

XM_063265641 ⟹ XP_063121711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,559,676 - 123,795,853 (+)	NCBI

RefSeq Acc Id:

XM_063265642 ⟹ XP_063121712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,594,528 - 123,795,853 (+)	NCBI

RefSeq Acc Id:

XM_063265643 ⟹ XP_063121713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,593,820 - 123,795,853 (+)	NCBI

RefSeq Acc Id:

XM_063265644 ⟹ XP_063121714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,559,717 - 123,795,853 (+)	NCBI

RefSeq Acc Id:

XM_063265645 ⟹ XP_063121715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,679,739 - 123,795,853 (+)	NCBI

RefSeq Acc Id:

XM_063265646 ⟹ XP_063121716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,679,760 - 123,795,853 (+)	NCBI

RefSeq Acc Id:

XM_063265647 ⟹ XP_063121717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,766,644 - 123,795,853 (+)	NCBI

RefSeq Acc Id:

XM_063265648 ⟹ XP_063121718

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,536,818 - 123,767,561 (+)	NCBI

RefSeq Acc Id:

XM_063265649 ⟹ XP_063121719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	123,536,818 - 123,767,561 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414621	(Get FASTA)	NCBI Sequence Viewer
	XP_017451630	(Get FASTA)	NCBI Sequence Viewer
	XP_038938618	(Get FASTA)	NCBI Sequence Viewer
	XP_063121710	(Get FASTA)	NCBI Sequence Viewer
	XP_063121711	(Get FASTA)	NCBI Sequence Viewer
	XP_063121712	(Get FASTA)	NCBI Sequence Viewer
	XP_063121713	(Get FASTA)	NCBI Sequence Viewer
	XP_063121714	(Get FASTA)	NCBI Sequence Viewer
	XP_063121715	(Get FASTA)	NCBI Sequence Viewer
	XP_063121716	(Get FASTA)	NCBI Sequence Viewer
	XP_063121717	(Get FASTA)	NCBI Sequence Viewer
	XP_063121718	(Get FASTA)	NCBI Sequence Viewer
	XP_063121719	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76966	(Get FASTA)	NCBI Sequence Viewer
	EDL76967	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015643.8
	ENSRNOP00000091734.1

RefSeq Acc Id:

XP_017451630 ⟸ XM_017596141

- Peptide Label:

isoform X1

- Sequence:

show sequence

MERAAQSADGGGGGGSNSSSRSSSRATSAGSSPSCSLAGRGVASRSGAAGLGGGGSRSSPGSVA
ASPSGGGGRRREPALEGVLSKYTNLLQGWQNRYFVLDFEAGLLQYFVNEQSKHQKPRGVLSLSG
AIVSLSDEAPHMLVVYSANGEMYKLRAADSREKQLWVTQLRACAKYHMETSSKMMNQVEGQQKN
LVHAIESLPGSGPLTALDQDLLLLKATSAATLSCLGECLTLLQQSVRQAGPPSHKPGASESILG
WHGPTSQSTDQLKNGTLGSLPSASANITWAILPNSAEEEHSSQPEPEPDSGPELVLSEEEQSDH
EDKGEVEPGTVEDQHSVILHLISQLKLGMDLTKVVLPTFILEKRSLLEMYADFMAHPDLLLAIT
AGATPEERVISFVEYYLTAFHEGRKGTLAKKPYNPIIGETFHCSWEVPKDRVKSKWTSPHPPIS
CHEHPMADDPSKSYKLRFVAEQVSHHPPISCFYCECKEKRLCVNTHVWTKSKFMGMSVGVSMIG
EGVLRLLDHGEEYVFTLPSAYARSILTVPWVELGGKVNISCAKTGYSATVTFHTKPFYGGKVHR
VTAEVKHNPTNTIVCKAHGEWNGTLEFTYSNGETKVIDTTTLPVYPKKLRPLEKQGPMESRNLW
QEVTHYLRLGDIDAATEQKRRLEEKQRTEERKRETLRTPWRPKYFIPEGDGWVYFNPLWKTH

hide sequence

Ensembl Acc Id:

ENSRNOP00000015643 ⟸ ENSRNOT00000015643

RefSeq Acc Id:	XP_038938618 ⟸ XM_039082690
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000091734 ⟸ ENSRNOT00000102477

RefSeq Acc Id:	XP_063121710 ⟸ XM_063265640
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063121719 ⟸ XM_063265649
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063121718 ⟸ XM_063265648
- Peptide Label:	isoform X8

RefSeq Acc Id:	NP_001414621 ⟸ NM_001427692
- UniProtKB:	F1LWM8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121711 ⟸ XM_063265641
- Peptide Label:	isoform X3
- UniProtKB:	A6I3R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121714 ⟸ XM_063265644
- Peptide Label:	isoform X3
- UniProtKB:	A6I3R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121713 ⟸ XM_063265643
- Peptide Label:	isoform X3
- UniProtKB:	A6I3R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121712 ⟸ XM_063265642
- Peptide Label:	isoform X3
- UniProtKB:	A6I3R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121715 ⟸ XM_063265645
- Peptide Label:	isoform X4
- UniProtKB:	A6I3R1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121716 ⟸ XM_063265646
- Peptide Label:	isoform X5
- UniProtKB:	A6I3R1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121717 ⟸ XM_063265647
- Peptide Label:	isoform X6

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LWM8-F1-model_v2	AlphaFold	F1LWM8	1-627	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561652	AgrOrtholog
BioCyc Gene	G2FUF-28906	BioCyc
Ensembl Genes	ENSRNOG00000011435	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015643.8	UniProtKB/TrEMBL
	ENSRNOT00000102477.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.2720	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	2.40.160.120	UniProtKB/TrEMBL
	3.30.70.3490	UniProtKB/TrEMBL
InterPro	OSBP_sf	UniProtKB/TrEMBL
	Oxysterol-bd	UniProtKB/TrEMBL
	Oxysterol-bd_CS	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	PH_domain	UniProtKB/TrEMBL
NCBI Gene	316039	ENTREZGENE
PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 10	UniProtKB/TrEMBL
	Oxysterol_bd	UniProtKB/TrEMBL
Pfam	Oxysterol_BP	UniProtKB/TrEMBL
	PF00169	UniProtKB/TrEMBL
PhenoGen	Osbpl10	PhenoGen
PROSITE	OSBP	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011435	RatGTEx
SMART	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF144000	UniProtKB/TrEMBL
UniProt	A0A8I6AGA5_RAT	UniProtKB/TrEMBL
	A6I3R0	ENTREZGENE, UniProtKB/TrEMBL
	A6I3R1	ENTREZGENE, UniProtKB/TrEMBL
	F1LWM8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Osbpl10	oxysterol binding protein-like 10	RGD1561652_predicted	similar to oxysterol-binding protein-like protein 10 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561652_predicted	similar to oxysterol-binding protein-like protein 10 (predicted)	LOC316039	similar to oxysterol-binding protein-like protein 10	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC316039	similar to oxysterol-binding protein-like protein 10			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message