TMEM223 (transmembrane protein 223) - Rat Genome Database

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Gene: TMEM223 (transmembrane protein 223) Sus scrofa
Analyze
Symbol: TMEM223
Name: transmembrane protein 223
RGD ID: 14234582
Description: ENCODES a protein that exhibits mitochondrial ribosome binding (inferred); INVOLVED IN mitochondrial respiratory chain complex IV assembly (inferred); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,981,963 - 8,983,263 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.128,982,125 - 8,983,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,327,366 - 8,328,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM223
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,981,963 - 8,983,263 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.128,982,125 - 8,983,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,327,366 - 8,328,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM223
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,771,120 - 62,792,006 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,771,629 - 62,792,013 (-)Ensemblhg38GRCh38
GRCh371162,557,443 - 62,559,478 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,314,363 - 62,316,062 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1159,886,371 - 59,888,070 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,886,813 - 58,888,512 (-)NCBIHuRef
CHM1_11162,440,869 - 62,442,568 (-)NCBICHM1_1
T2T-CHM13v2.01162,760,439 - 62,781,398 (-)NCBIT2T-CHM13v2.0
Tmem223
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,748,360 - 8,749,839 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,748,360 - 8,749,839 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38198,770,996 - 8,772,475 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,770,996 - 8,772,475 (+)Ensemblmm10GRCm38
MGSCv37198,845,486 - 8,846,965 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36198,838,041 - 8,839,520 (+)NCBIMGSCv36mm8
Celera198,530,887 - 8,532,366 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.54NCBI
Tmem223
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,097,835 - 215,099,196 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1215,097,827 - 215,099,188 (+)EnsemblGRCr8
mRatBN7.21205,668,716 - 205,670,077 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,662,063 - 205,670,056 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1214,077,134 - 214,078,495 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,112,267 - 221,113,628 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,804,970 - 213,806,331 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1214,457,939 - 214,459,300 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1219,366,709 - 219,368,070 (+)NCBILyon_Normotensive
Lyon_Hypertensive1216,122,197 - 216,123,558 (+)NCBILyon_Hypertensive
F344_StmMcwi1214,349,065 - 214,350,426 (+)NCBIF344_StmMcwi
Rnor_6.01224,970,807 - 224,972,168 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,970,807 - 224,972,168 (+)Ensemblrn6Rnor6.0
Rnor_5.01231,908,980 - 231,910,341 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41211,441,877 - 211,443,238 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1203,181,645 - 203,183,006 (+)NCBICelera
Cytogenetic Map1q43NCBI
Tmem223
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599450,971 - 451,880 (+)Ensembl
ChiLan1.0NW_004955599450,518 - 451,947 (+)NCBIChiLan1.0ChiLan1.0
TMEM223
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2964,015,433 - 64,017,106 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11165,058,125 - 65,059,798 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,145,750 - 58,147,454 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,499,731 - 61,501,478 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,497,328 - 61,501,478 (-)EnsemblpanPan2panpan1.1
TMEM223
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,895,311 - 53,896,431 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,895,349 - 53,896,283 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1852,501,345 - 52,502,465 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01854,947,772 - 54,948,892 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,947,817 - 54,948,751 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,044,388 - 54,045,508 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,618,849 - 53,619,969 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,415,112 - 54,416,232 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem223
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,387,631 - 10,388,736 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581501,157 - 502,479 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936581501,360 - 502,482 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM223
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,111,275 - 11,112,983 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,111,317 - 11,112,678 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038108,454,322 - 108,456,036 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem223
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,246,822 - 1,247,801 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249261,246,105 - 1,247,858 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem223
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v129,171,267 - 9,172,678 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in TMEM223
40 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000063185   ⟹   ENSSSCP00000032774
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl28,982,157 - 8,983,263 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000075526   ⟹   ENSSSCP00000067443
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl28,981,963 - 8,983,129 (+)Ensembl
RefSeq Acc Id: XM_003353817   ⟹   XP_003353865
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.128,982,125 - 8,983,273 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003353865   ⟸   XM_003353817
- UniProtKB: A0A8D1L849 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000067443   ⟸   ENSSSCT00000075526
Ensembl Acc Id: ENSSSCP00000032774   ⟸   ENSSSCT00000063185


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038711 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025072215 UniProtKB/TrEMBL
  ENSSSCG00030011739 UniProtKB/TrEMBL
  ENSSSCG00035047078 UniProtKB/TrEMBL
  ENSSSCG00040042890 UniProtKB/TrEMBL
  ENSSSCG00045034551 UniProtKB/TrEMBL
  ENSSSCG00065009146 UniProtKB/TrEMBL
  ENSSSCG00070025039 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000063185 ENTREZGENE
  ENSSSCT00000063185.3 UniProtKB/TrEMBL
  ENSSSCT00000075526.2 UniProtKB/TrEMBL
  ENSSSCT00025099295.1 UniProtKB/TrEMBL
  ENSSSCT00030016102.1 UniProtKB/TrEMBL
  ENSSSCT00035062672.1 UniProtKB/TrEMBL
  ENSSSCT00040057512.1 UniProtKB/TrEMBL
  ENSSSCT00045059286.1 UniProtKB/TrEMBL
  ENSSSCT00065012179.1 UniProtKB/TrEMBL
  ENSSSCT00070050052.1 UniProtKB/TrEMBL
InterPro Tmem223 UniProtKB/TrEMBL
  TMEM70/TMEM186/TMEM223 UniProtKB/TrEMBL
KEGG Report ssc:100620450 UniProtKB/TrEMBL
NCBI Gene TMEM223 ENTREZGENE
PANTHER PTHR14549 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 223 UniProtKB/TrEMBL
Pfam TMEM70 UniProtKB/TrEMBL
UniProt A0A286ZMH2_PIG UniProtKB/TrEMBL
  A0A4X1VKD8_PIG UniProtKB/TrEMBL
  A0A5G2QZR8_PIG UniProtKB/TrEMBL
  A0A8D1L849 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94144 ENTREZGENE