LOC100626876 (short-chain dehydrogenase/reductase family 16C member 6-like) - Rat Genome Database

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Gene: LOC100626876 (short-chain dehydrogenase/reductase family 16C member 6-like) Sus scrofa
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Symbol: LOC100626876
Name: short-chain dehydrogenase/reductase family 16C member 6-like
RGD ID: 13938462
Description: ENCODES a protein that exhibits oxidoreductase activity (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1475,553,908 - 75,579,240 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,469,404 - 82,498,778 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC100626876
1148 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
hemolymphoid system
mesenchyme
mesoderm
reproductive system
respiratory system
3 1 1 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021089352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021089352   ⟹   XP_020945011
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1475,553,908 - 75,579,240 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020945011   ⟸   XM_021089352
- UniProtKB: A0A287AFF3 (UniProtKB/TrEMBL),   A0A4X1STW9 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036133 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025022592 UniProtKB/TrEMBL
  ENSSSCG00035042485 UniProtKB/TrEMBL
  ENSSSCG00040022592 UniProtKB/TrEMBL
  ENSSSCG00045019843 UniProtKB/TrEMBL
  ENSSSCG00055025351 UniProtKB/TrEMBL
  ENSSSCG00065079218 UniProtKB/TrEMBL
  ENSSSCG00070003578 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000062885 ENTREZGENE
  ENSSSCT00000062885.2 UniProtKB/TrEMBL
  ENSSSCT00025030735.1 UniProtKB/TrEMBL
  ENSSSCT00035056477.1 UniProtKB/TrEMBL
  ENSSSCT00040030325.1 UniProtKB/TrEMBL
  ENSSSCT00045033925.1 UniProtKB/TrEMBL
  ENSSSCT00055050277.1 UniProtKB/TrEMBL
  ENSSSCT00065110124.1 UniProtKB/TrEMBL
  ENSSSCT00070006866.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
NCBI Gene LOC100626876 ENTREZGENE
PANTHER PKSB UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 16C MEMBER 6 UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A287AFF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1STW9 ENTREZGENE, UniProtKB/TrEMBL