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Gene: LOC110259735 (olfactory receptor 2T29-like) Sus scrofa

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Symbol:

LOC110259735

Name:

olfactory receptor 2T29-like

RGD ID:

13936698

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	52,699,316 - 52,700,278 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC110259735
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	52,699,316 - 52,700,278 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

OR2T4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	248,361,665 - 248,362,627 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	248,361,665 - 248,362,627 (+)	Ensembl			hg38	GRCh38
GRCh37	1	248,524,967 - 248,525,929 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	246,591,506 - 246,592,552 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	244,850,923 - 244,851,970	NCBI
Celera	1	221,809,401 - 221,810,446 (+)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	218,908,351 - 218,909,396 (+)	NCBI		HuRef
CHM1_1	1	249,797,082 - 249,798,128 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	247,788,117 - 247,789,081 (+)	NCBI		T2T-CHM13v2.0

Or2t47
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	58,442,131 - 58,443,063 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	58,441,680 - 58,446,462 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	58,551,305 - 58,552,237 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	58,550,854 - 58,555,636 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	58,364,807 - 58,365,739 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	58,367,500 - 58,368,432 (-)	NCBI		MGSCv36	mm8
Celera	11	63,296,740 - 63,297,672 (-)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	36.19	NCBI

Or2t47d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	43,383,531 - 43,384,493 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	43,383,009 - 43,387,400 (-)	Ensembl				GRCr8
mRatBN7.2	10	42,883,114 - 42,884,076 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	42,855,530 - 42,860,622 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	10	42,880,571 - 42,886,921 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	47,544,903 - 47,545,865 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	47,035,350 - 47,036,312 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	42,538,850 - 42,539,812 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	10	46,348,413 - 46,349,375 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	10	46,977,587 - 46,978,549 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	10	48,673,300 - 48,674,262 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	10	48,532,105 - 48,533,067 (-)	NCBI		F344_StmMcwi
Rnor_6.0	10	44,122,016 - 44,122,978 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	44,122,016 - 44,122,978 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	43,927,859 - 43,928,821 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	44,350,458 - 44,351,420 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	42,169,261 - 42,170,223 (-)	NCBI		Celera
RGSC_v3.1	10	44,364,080 - 44,365,043 (-)	NCBI
Cytogenetic Map	10	q22	NCBI

LOC129392907
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	624,642 - 625,619 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	900,745 - 901,782 (-)	NCBI		NHGRI_mPanPan1

OR2T4D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	2,763,585 - 2,764,547 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	2,763,585 - 2,764,547 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	2,413,689 - 2,414,651 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	2,492,280 - 2,493,242 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	2,492,280 - 2,493,242 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	2,635,680 - 2,636,642 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	2,434,821 - 2,435,783 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	2,101,914 - 2,102,876 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Variants

Variants in LOC110259735
22 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021085478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021085478 ⟹ XP_020941137

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	52,699,316 - 52,700,278 (-)	NCBI

Sequence:

show sequence

ATGGAAAACTCCACCTGGGTAGCCAACCACACTGGACAGTTGGAGTTCATCCTTCAGGGACTCT
TCGGTCAATCCAAGCACCCAGCTCTCCTTTGCACAGTCATTTTTGTGATTTTCCTGATGGCCTT
ATCTGGGAACAGCATCCTGATTTTTCTGATTCATTCTAATGCCCATCTTCACACCCCCATGTAC
TTTTTCATCAGCCAATTGTCTCTCATGGATGTGATGTACATTTCTGTCACTGTGCCCAAGATGC
TCATGGACCAGGTCATGGGCATGAATAAGATCTCAGTCCCTGAATGTGGAATGCAGATATTTTT
CTATTTGACTCTAGTAGGTTCAGAATTTTTCCTTCTGGCAACTATGGCCTATGACCGCTATGTG
GCCATTTGCCATCCACTCCATTATTCTACTCTCATGAATCATAAGGGGTGTCTCCTATTGGTGT
TCGGCTGCTGGTTCCTAGGACTGGTGGATGGCTTTATGCTCACACCCATCACCATGACCTTCCC
CTTCTGCAGATCCTGGGAGATCCATCATTTCTTCTGTGAGGTCCCTGCTGTAATGAAGCTTTCC
TGCTCAGACACATCCATCTATGAGACACTCATGTACCTGTGTTGTATCCTCATGCTCCTCATCC
CTTTCACAATCATTTCAAGCTCCTACTCTTTCATCCTCCTCACCATCCACAGAATGAATTCAGC
AGAGGGTCAGAAGAAGGCCTTTATGACTTGCTCTTCCCACATGACTGTGGTCATCCTCTTCTAT
GGGGCTGCCATCTACACCTACATGCTCCCTACCTCCTACCACACTCCTGAGAAAGACATGGTTG
TATCTGTTTTATACACCATACTCACTCCTGTGTTAAACCCTTTAATCTATAGTTTTAGGAATAA
GGATGTTACAGGGGCTTTAAAGAAAATGTTCAATGGGGGAGTTATCTTTCAACGTACTATGAAG
TAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020941137	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00015015829.1
	ENSSSCP00025045199.1
	ENSSSCP00030034574.1
	ENSSSCP00035005239.1
	ENSSSCP00040029673.1
	ENSSSCP00050003084.1

RefSeq Acc Id:

XP_020941137 ⟸ XM_021085478

- UniProtKB:

A0A8D0TDR0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MENSTWVANHTGQLEFILQGLFGQSKHPALLCTVIFVIFLMALSGNSILIFLIHSNAHLHTPMY
FFISQLSLMDVMYISVTVPKMLMDQVMGMNKISVPECGMQIFFYLTLVGSEFFLLATMAYDRYV
AICHPLHYSTLMNHKGCLLLVFGCWFLGLVDGFMLTPITMTFPFCRSWEIHHFFCEVPAVMKLS
CSDTSIYETLMYLCCILMLLIPFTIISSSYSFILLTIHRMNSAEGQKKAFMTCSSHMTVVILFY
GAAIYTYMLPTSYHTPEKDMVVSVLYTILTPVLNPLIYSFRNKDVTGALKKMFNGGVIFQRTMK

hide sequence

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00015030180	UniProtKB/TrEMBL
	ENSSSCG00025074204	UniProtKB/TrEMBL
	ENSSSCG00030054302	UniProtKB/TrEMBL
	ENSSSCG00035012208	UniProtKB/TrEMBL
	ENSSSCG00040051584	UniProtKB/TrEMBL
	ENSSSCG00050005241	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00015039993.1	UniProtKB/TrEMBL
	ENSSSCT00025102189.1	UniProtKB/TrEMBL
	ENSSSCT00030075665.1	UniProtKB/TrEMBL
	ENSSSCT00035015352.1	UniProtKB/TrEMBL
	ENSSSCT00040069670.1	UniProtKB/TrEMBL
	ENSSSCT00050007163.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC110259735	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A8D0NAE4_PIG	UniProtKB/TrEMBL
	A0A8D0TDR0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0XEC0_PIG	UniProtKB/TrEMBL
	A0A8D0YSC4_PIG	UniProtKB/TrEMBL
	A0A8D1F1R9_PIG	UniProtKB/TrEMBL
	A0A8D1JTS4_PIG	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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