Rnase9 (ribonuclease A family member 9) - Rat Genome Database

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Gene: Rnase9 (ribonuclease A family member 9) Rattus norvegicus
Analyze
Symbol: Rnase9
Name: ribonuclease A family member 9
RGD ID: 1359501
Description: Predicted to enable nucleic acid binding activity. Predicted to be involved in defense response to Gram-positive bacterium. Predicted to act upstream of or within positive regulation of flagellated sperm motility involved in capacitation. Predicted to be located in extracellular region. Orthologous to human RNASE9 (ribonuclease A family member 9 (inactive)); INTERACTS WITH bisphenol A; carbon nanotube; silicon dioxide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: epididymis-specific RNase-like; inactive ribonuclease-like protein 9; ribonuclease 9; ribonuclease A family, member 9; ribonuclease, RNase A family, 9 (non-active); ribonuclease-like protein 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,733,051 - 26,736,605 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1526,732,633 - 26,736,679 (-)EnsemblGRCr8
mRatBN7.21524,259,525 - 24,263,079 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,259,525 - 24,263,079 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1527,030,693 - 27,034,247 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,990,103 - 27,993,661 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,239,248 - 26,242,802 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,964,000 - 27,968,492 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,964,804 - 27,968,358 (-)Ensemblrn6Rnor6.0
Rnor_5.01531,797,573 - 31,801,127 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41527,019,251 - 27,022,788 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1524,579,404 - 24,582,958 (-)NCBICelera
RGSC_v3.11527,034,950 - 27,038,488 (-)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories. Cho S, etal., Genomics. 2005 Feb;85(2):208-20.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Discovery in silico and characterization in vitro of novel genes exclusively expressed in the mouse epididymis. Penttinen J, etal., Mol Endocrinol 2003 Nov;17(11):2138-51. Epub 2003 Aug 14.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17005942   PMID:24719258  


Genomics

Comparative Map Data
Rnase9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,733,051 - 26,736,605 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1526,732,633 - 26,736,679 (-)EnsemblGRCr8
mRatBN7.21524,259,525 - 24,263,079 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,259,525 - 24,263,079 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1527,030,693 - 27,034,247 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,990,103 - 27,993,661 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,239,248 - 26,242,802 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,964,000 - 27,968,492 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,964,804 - 27,968,358 (-)Ensemblrn6Rnor6.0
Rnor_5.01531,797,573 - 31,801,127 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41527,019,251 - 27,022,788 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1524,579,404 - 24,582,958 (-)NCBICelera
RGSC_v3.11527,034,950 - 27,038,488 (-)NCBI
Cytogenetic Map15p14NCBI
RNASE9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,556,093 - 20,561,047 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,556,093 - 20,561,047 (-)Ensemblhg38GRCh38
GRCh371421,024,252 - 21,029,206 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,094,092 - 20,098,930 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341420,094,450 - 20,095,068NCBI
Celera14885,131 - 889,969 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,145,214 - 1,150,052 (-)NCBIHuRef
CHM1_11421,026,277 - 21,031,115 (-)NCBICHM1_1
T2T-CHM13v2.01414,753,225 - 14,758,179 (-)NCBIT2T-CHM13v2.0
Rnase9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391451,275,916 - 51,279,360 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1451,275,916 - 51,279,326 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381451,038,459 - 51,041,903 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1451,038,459 - 51,041,869 (-)Ensemblmm10GRCm38
MGSCv371451,658,134 - 51,661,542 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361449,960,410 - 49,963,820 (-)NCBIMGSCv36mm8
Celera1447,315,783 - 47,319,194 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.35NCBI
Rnase9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555501,371,792 - 1,372,355 (-)NCBIChiLan1.0ChiLan1.0
RNASE9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,056,324 - 22,056,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,272,811 - 21,273,437 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,421,047 - 1,425,872 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,478,278 - 19,483,105 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,478,278 - 19,480,838 (-)EnsemblpanPan2panpan1.1
RNASE9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,875,825 - 17,878,702 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,358,311 - 18,361,196 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01518,132,531 - 18,135,444 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,132,899 - 18,133,495 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,814,769 - 17,817,653 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,870,174 - 17,873,064 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,998,973 - 18,001,857 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnase9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,814,720 - 77,820,025 (-)NCBIHiC_Itri_2
RNASE9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,341,091 - 78,367,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RNASE9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,078,437 - 21,083,863 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,078,799 - 21,079,425 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605925,345,886 - 25,351,312 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnase9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248254,607,826 - 4,608,389 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnase9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11272,273,900 - 72,274,448 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnase9
91 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:74
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000040616
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 3 2 32 46 57 26 66 26 6 150 79 6 16 31 42 31 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000040616   ⟹   ENSRNOP00000042519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1526,732,633 - 26,736,679 (-)Ensembl
mRatBN7.2 Ensembl1524,259,525 - 24,263,079 (-)Ensembl
Rnor_6.0 Ensembl1527,964,804 - 27,968,358 (-)Ensembl
RefSeq Acc Id: NM_001008561   ⟹   NP_001008561
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81526,733,051 - 26,736,605 (-)NCBI
mRatBN7.21524,259,525 - 24,263,079 (-)NCBI
Rnor_6.01527,964,804 - 27,968,358 (-)NCBI
Rnor_5.01531,797,573 - 31,801,127 (-)NCBI
RGSC_v3.41527,019,251 - 27,022,788 (-)RGD
Celera1524,579,404 - 24,582,958 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001008561 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAQ73515 (Get FASTA)   NCBI Sequence Viewer  
  AAV87198 (Get FASTA)   NCBI Sequence Viewer  
  EDL88434 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042519
  ENSRNOP00000042519.2
RefSeq Acc Id: NP_001008561   ⟸   NM_001008561
- Peptide Label: precursor
- UniProtKB: Q5QJV4 (UniProtKB/TrEMBL),   A6KEC9 (UniProtKB/TrEMBL),   W0UVG5 (UniProtKB/TrEMBL),   F7FI09 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042519   ⟸   ENSRNOT00000040616
Protein Domains
Ribonuclease A-domain

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5QJV4-F1-model_v2 AlphaFold Q5QJV4 1-182 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699628
Promoter ID:EPDNEW_R10150
Type:single initiation site
Name:Rnase9_1
Description:ribonuclease A family member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01527,968,380 - 27,968,440EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359501 AgrOrtholog
BioCyc Gene G2FUF-14042 BioCyc
Ensembl Genes ENSRNOG00000029516 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040616 ENTREZGENE
  ENSRNOT00000040616.5 UniProtKB/TrEMBL
Gene3D-CATH 3.10.130.10 UniProtKB/TrEMBL
InterPro RNaseA UniProtKB/TrEMBL
  RNaseA-like_dom_sf UniProtKB/TrEMBL
  RNaseA_domain UniProtKB/TrEMBL
KEGG Report rno:364301 UniProtKB/TrEMBL
NCBI Gene 364301 ENTREZGENE
PANTHER PTHR11437:SF14 UniProtKB/TrEMBL
  RNaseA UniProtKB/TrEMBL
Pfam RnaseA UniProtKB/TrEMBL
PhenoGen Rnase9 PhenoGen
RatGTEx ENSRNOG00000029516 RatGTEx
Superfamily-SCOP RNaseA UniProtKB/TrEMBL
UniProt A6KEC9 ENTREZGENE
  F7FI09 ENTREZGENE, UniProtKB/TrEMBL
  Q5QJV4 ENTREZGENE, UniProtKB/TrEMBL
  W0UVG5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6KEC9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Rnase9  ribonuclease A family member 9  Rnase9  ribonuclease, RNase A family, 9 (non-active)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Rnase9  ribonuclease, RNase A family, 9 (non-active)    ribonuclease A family, member 9  Name updated 1299863 APPROVED
2005-07-29 Rnase9  ribonuclease A family, member 9      Symbol and Name status set to provisional 70820 PROVISIONAL