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Gene: LOC111092291 (uncharacterized LOC111092291) Canis lupus familiaris

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Symbol:

LOC111092291

Name:

uncharacterized LOC111092291

RGD ID:

13272192

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	45,526,859 - 45,552,197 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	42,598,136 - 42,623,411 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	46,011,734 - 46,037,030 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	2	43,081,739 - 43,106,996 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	43,887,496 - 43,912,732 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	44,707,978 - 44,733,222 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC111092291
267 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_002618999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005321947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005355546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005390105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005423147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_002618999

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	2	45,526,859 - 45,552,197 (-)	NCBI
Dog10K_Boxer_Tasha	2	42,598,136 - 42,623,411 (-)	NCBI

Sequence:

show sequence

GTTAAGCAGGTCTGCCAGCTTCAACTTTGTGCCTGGGGAGCCCTAAGTTGCCATATATGAAGCT
GGATGGGGTGCCCTGTTTAGAGAGACCACATACAGAGAGTAGGAAAAGGAGGAAAGACTCTTAG
ACTGCAGGGAGGAAAACTAAGGCCAACAGAGAAACTGTGTCCTCACAGTTAGGACCCCAGTTGA
GTGATTCCAGCCAACCCCAGCTGCCCTAACCATCCTGGTTGAGGTGTCGTCAGGCATTCCTGTT
TTTACAAAGGAGAAGCTGAAGCCCAGAGAAATTGAAGGTAACATGGCTACCATGAGCTGAGACC
AGAAGTTAAGCACATACCAGTGCCAATGAGGGATAGGAGGACCACAGGCTCTACTGAAACTAAG
TGGGTTGTGTTTCTTCAAAGCATTGACATACAAGAGACCTACACCAAAGAGAAGCTCTCTAAGA
AGAAACAAGAATGATAGCGCAACAAGCTATGGAAACTGAGCCTCAAGGAGTAACTTGGCATGTT
GATGGTCCAGCTGAAGGAACACAGGACTCCTTACTCCTCATTTAGATGCTGTTTTTACTCTATC
CCATTGTTCTGAAAATGTTGGAACATCATACCTTTAATGCATTTTGTTTTAACCTGCAGCCCCA
CTTGAAAGCTCTACAATAACACATCTTTACCACAAAGTTCTGACATCAGAGCACCAAGTTTATT
ATCCACCAAGCTGAGTAAAGAGCAAGTGAACAGAAAACAACACACAATCAATCAAGAACCTACT
GCTGATTGGTCATGAGGAAGAGGAGAAGGAGCACTGAATAGGATGTTGAAGAAGAAAATCAAGC
AAAAGAATGTCTGGATTCTGAACTCTGCATACGTTGCCTATTTAAACATAACTTCAGAAGAAGA
GAATTCTAAAGATACAGCAAGTCTTAAGAGAGGAAATCAACAGAAAGAAAACTCCACAGTTTCA
AGTTTTATTACTGAACAAAAATGCTCTCCTGAATTTCTACCTCCTTCTTCCCTGTCCCCTTTGG
GCTTGAAAAAACTGTCAGCAGATAGCCCCTTCCAGAGCCCAGTGACTTCCAAGAAAACGGGCTC
AATGTCCTTTTCCCCCAATCCAGACAAAGAGAATGTGAGAGCAGGACAAAGGTCTTCCAAGGGC
CTTCTCGTAAAGGGTCAATGTAAAAGACTAAACAGGAAAGGCTTTTACTTCTAAAAAGGATCTC
CTCATTCCGTATCTGAGTTCATCAAATGGGGAACTGGGGTGTGGGAGAGGAAAAGCAGTAGGAC
TGGATAAATATTTCCTCCCTGATTGTTGATCTCTAGCAAATGTCCACCTGC

hide sequence

RefSeq Acc Id:

XR_005321947

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	2	43,081,739 - 43,106,996 (-)	NCBI

RefSeq Acc Id:

XR_005355546

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	2	44,707,978 - 44,733,222 (-)	NCBI

RefSeq Acc Id:

XR_005390105

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	2	43,887,496 - 43,912,732 (-)	NCBI

RefSeq Acc Id:

XR_005423147

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	2	46,011,734 - 46,037,030 (-)	NCBI

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC111092291	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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