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Gene: LOC111095453 (uncharacterized LOC111095453) Canis lupus familiaris

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Symbol:

LOC111095453

Name:

uncharacterized LOC111095453

RGD ID:

13248078

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	12,980,498 - 12,986,769 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	13,190,423 - 13,192,622 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	13,250,139 - 13,252,338 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	4	13,227,805 - 13,230,004 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	13,345,739 - 13,347,938 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	13,656,830 - 13,659,029 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC111095453
44 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_002625623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005324029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005357854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005392350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005425450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_002625623

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	12,980,498 - 12,986,769 (+)	NCBI
Dog10K_Boxer_Tasha	4	13,190,423 - 13,192,622 (+)	NCBI

Sequence:

show sequence

TGTTATTTGAAAAGCTAAGTTCTGCAGAAGAAAGCAGTGGGTACATTTTCAAGCTATACTGCTT
ATAAATATCCCAACCGTACGATTTGATATTGGCAAGTCTGGGACACCTGCTTTGAGGCTGCACG
TAGAAGTCATTCGCTATTTACTGCTTTAAACATAACCATTTGATTTGTAGATGACAAAAGAGTG
GGGCTGCCTGACAAAGCCTGATTTGGAATTTTTAAATGGCTATTTGGACTTATAAATCAGACAA
ATGGGCTGTAAATGTATGATGACATTATGGGCTCTCCTTGCCAAGTACCTTCTAATATTCTATT
GTGGGGAAAGAAATCTCCTGGGCAACATGACAGGTGTTGGGGGGAGCTGCAAACCCCACTGTTG
CTGACACACGATAGAGCCCTGCTCTCTAAGATGTCAAAACAGAGGATGAGCAACCACCTCAGTT
GCCACACTGACTGGCTTGATTCCAACGTTCTATCGATATATGCAAACACAAGATACACACTTCA
TTATTTTTCCTATGGTTGTGCCATAGATTCCAAATTTTTGGAATATTATCAGGTTATCAGTAGA
TTCTGAGAATCCAAAGAAATCTTTACCTGTGGGGGAACAGTTGGTTGGGTATGATAAACTCTCC
TTTATAGGATTTACCTAATCTTGAGACCTCCTGAGCACTTGTAGTTCTTGCCAATATTGATACA
TGCTGGAGTTCCCTAGAGCCAGGGATGGATCAATGAGGATGTACACAGATTAGCAGCACACGGA
CTCAAACTAACCCCACAAGATGGGCCCTTGTATAGTACAGAACAGTATCGTTGCCATTGACTAC
TGGGATGATGATGGTGATACGGTAACCTGAATGGAAGGCCTATATACGAGGTACTGTGCTAAGC
TTCCCACACACATTATCTAATCTGATCCTTACATTCTCCCTAAGAGGAAAAACTATTATATTTG
CCATTTTACACATAAGGAAATTGAGATTCATGGAGGGTAAGTCCCATGTTCAAGGTCATAGAGC
CAGTAAGTGGCTGGGATTTGGACCTAAGGAGTATAATTCTAAGGTCTATGCTCAGAATCGCTGT
GCAATACAAGAAACCCTTCATGGCAAGGAAGCAGAGGTTTGGGTCACAGTACGATAAAGTACCA
TATTTCACTAACAGTTTTTAAGAATTAGATTTCTAAGTTCAAAAGAATGAACAGTTATTAACTT
CCTATTTCTGGTACTTAATAAACCTCCATACACCATATAAAGATAATAATCTATGTATTATATT
TGATTATATCTGTATCACACATGATTACATCTATATTATATATCTAATCTTTCTCATTACATAT
ATATTACCTTCACAATCTACATGGGGCTCATGGCCAAGGCATTCTAGTGTCATGGTTCCAGAAT
CATTTAAGCTATAACAATCTGTATCATCCTCTTGCACAGCCACCAGCCACCTCAGAAAGAATAT
CCTTTCTTTTTTAAAAAAAAGATTTTATTTATTTATTCATGAGAGAGAGAGAGAGAGAGAGAAG
AGAGAGAGACATAGGCAGAAGGAGAAGCAGGCTCTATGCAGGGAGCCCGATATGGGACTCAATT
CCGGGACTCCGGCATCATGACCTGAACCAAAGGCAGACACTCAACTGCTAAGCCACCCAGGTGA
CCCAGAATATCCTTTCAGATAGAGATTTCTATTAATGTATCAAAGGGAAGGCCTCCAAACCATC
CTAGAAATAGTAAGAAAATCACATACCCACCTCCTTTCAGACATAGTCAATGAAAACAATTATG
ATTTGGTAAATAAGCTGCATGGGTTATTACCATCAAGGATTTAACAACTGTCATCATTTCAAGT
TTCTAGCATGACCTTGACAATAGACAGAACTTGGCAAGTAGAAACTCTTACTGATATTATTTTA
AAATAAAGAAGCCATAGTAGTATAATTAATTGCTAATCCAGTGAATCTAATATCAGTTATACTT
GCGTATATGCTTACATACACATAGATTTATCTTATACAGATCATGATTGAGTTAGTAAAATTTT
CTAGATAATTGGAGGTTAAGTTCTGAAACTTCAAAATTTGGAACATTTTGATAGTGAAAGTATA
TATATTTTACAAAGTTGTAAGTGCTAGTGATCATAAATATAAAATATCCCAGAGCTTTCTGTGA
ACACCTGCTCTCTCAGCTATGGGGATATCTGCTGTTTTGGAAAATAATGGCTTGGCTGACAAGG
CCAGAGGCTGGTGCAGGCCCAGGGGCTTGTCACTAAAATGAGTGTGACCTTTGGCAAATCATTT
ACTCTCCCTGACCCTCAGTGTCTTCATCTGTTAAATGGTGTGTGCGGTGGGGGATTTGGAAGAG
GTGATACCTACAGCCTTTTCTTCTTCACTAAGACTCTGGAGTTTGAAGATATTAGCATTTTTTG
GTAAGAGTATGTTCTAAGTCATGGTAAAATGAACATCCTAAGTGAAAAGAAATGATTTCTGGCA
GCAAAATGACAGACTCCTGTAAGCAGCCTTGCCCCAATACTTCTAATGTCTTTGGAGTGTTCTG
ATGTTTGTAATCCTTCATGACTTACTCTTTCCACGTTGTATAACATGATGCTAACAGTTTTTTG
AAGGACAGCTTTCTTGGGTAAATAATGCTAGGGGACCTTTACAGTGAATGAGAATAAATTAATA
CCACATTCAGAACCTGCACCTTTTCTCTCATTTTCTTTTTAAAGTCTGTTTCTGTGATTTCAAT
GTTATGTATAACAATGGAGAGACGTTTCATAGAACTTTGAAAAATAATATAAATAAAGCTACAT
AAGAGATAGAATTAAGAATTGGCATCCTACCTGCTGGATCGAGCTTAAAAGAAAAGTCAGCAAA
GAGAATATAATGCTATCCTAAACAACGTTCCATATTCCAGTTTCGTTGGTTTAAAATTTTAATT
GTGAAGATCAGCTCAGACTATTAGGCTTATAATTAGAGACGGTCTCATAGAGAATGAGAAAGTA
TTTCAGATCCAGAGCATTGCTTACTACAACCCAGGCATGCATTTTTAATGAACCACTTGCTGAG
TACCTCTGGGGAGAGAATTATGCTTACTGCTACATTAAAAGTAATGAGAAAAATATAAGTAAGA
TACAATGGCTTCTTAAATGACAAAAAAATGTTAAAGTAACATCAATGTATATTTTATTCCTTTT
TTAGATATGCATGAGAGTTCTATTAATGCAAAAAAAAAGGGCTGAATTTTGAGGGGAAGTCAGA
TTTTCACAGGACTGTAAAGAGTTAACAGATGCCCTAGAAAGGACAGATCCCAAGTGCCAATACA
AGCCGTTTCAGTCATGGAATATTTACTGAGCATTTAACTGATGTTCCTCCCCACCCCCCATGAC
CCCTCTAACCACACTTTGCTAGTTTAGGAAGGGAACTGGGGGCTTTTTAACTTTGGGTTTTCAG
AGGACAAAGATTTTTAATCCCTCATGGAAAGAATTTAACAAGAATTCTTCAGGACAACAGTCAC
CAATATTTCTTGAGCTTTGTATGTTCCAAGCAGCAAATTCTATGTTTACACATGTACTCTCATG
ACTTATCTGCCCTTTGAAGAAGGTTCTCTCATTATCCCCATGTTACAGAGGAAGGACACAAGGT
TGGAGAGGATCAGTTGCTTGCTCAAGGTCAAGCCGAGACTAGGGTTCATAACAACATAACCCTT
ATAGTCTACATGGGAAATCCAGAGAAGGGGCAGGCAGGGGCACACATGTCAACAGCTCATGGCA
TTCTTGATACATTGGCTAAAGGAATTTGGCATAGACCTTTGGTTGCTTGGGTTCCATGGTCTCT
GTCTTCTAAGCTGGGTAGAACCTCTCCATACCCATGAAGCCTTAGCTACAGTTCTAATGCCCTA
GCCTTTCTAGGAGGGAGTGCTAAACAGGTGGCCTCTCCAGGAGAGGCTGTTAACCATATATGTG
TGCATTCACATTCGCTGCCAAGTTTTTGTTTTGGTCACCTCTCCTGCACATTTTAATCTGGAGA
CGATTACGGTCCATTCTGGGAAGGGATAAAGGGGATTAGCATTTGTGAGGTCAGCTCTGACAGT
GTCCCTTTGTGCCTGGGTTCCTGACCTTGATCAACTTCTCTGCTGGTTAACGGCAGAGCACTTG
CCGCACAATGAGCACACATTTCAGTGAGCTGGAAAAATAAGGGAAGCAAGCTTCCAGGCCCTTT
ATCTCTGGAGATTACTCAAGTAACAAACCCTTGGAGGAGGCAAGTCAGGGCAGAGCCTCAGTGG
GTGTTATAGCTCAAGGAGACCATCAGCGCGTCCCTGTCCCTGACCGGGCAGGGCAGAGGAGAAG
ACTGCGGCCAAGGATGTGGCTTCTTAAGGTCGTTGTCTGGGCAGGGGCTCAGCTGAGCCCAGGA
CTCCCATGATTGAAGAAGCTTCTGGAAGACAGATTCTGCCCCTATTGTATATGATTTTGATAGT
ATCTCGCTTGGTGACATTTGTTAAAAGGTAGAGCTGATCCTGTTTTACAAATGAAAGCGGTGAG
CAACAGTCAACAGCTCCTTGTAACTGCAAAATTAAGAGGCACTTGATGGGATGAGCACGGGGTG
ATATGCTATATGTTGGCAAATTGAACTCCAATAAAAAAAAAAAAAGAGGCTAACTGACACTTCA
ACACTGCCTAAGGAACTCGTTCATGGAAACAGTTGAAGAACTGAAGTCATCTGGTTAATTAAAC
ACACACATGTTCATGAAGATACCACTTAGGCTTTTCAGAAGGCACATACCTCGCTGTTGGCGCT
TTCCACAAATGAGCCCCCAAACATGGCAGCCATCCACCTGCAGCTACAGATCAGCAACGGTTTG
TGGGCGCTGATGGCTCCATCATCCAACCTAAATGTCACATCTGCCCAAGGATTGAGGAAACAGA
ACTGTGAGCCAGCTCCGCTGAGTCTGCCTTGTTCATCAACCTACATCTCCTGCTCCTCTCTTCC
GTATCTTTCCTTCGTGATTTTGTATCAACCTCCACCTCTGGAACTGCCAATTCCTTCTATGCCA
TCCAAGGATCAAGGGGTAAACATTTAAAATTGCACCTAAGATCCCAGCACAAATTCTCTGAACC
ATACAGTAACACAAAGGAAAGGAATATTTTTCTTTCTCCATACTCTGAAAAATTTCAAACATAA
TAAAAACAGTGGAAGAAATAGTACATTGTTAA

hide sequence

RefSeq Acc Id:

XR_005324029

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	13,227,805 - 13,230,004 (+)	NCBI

RefSeq Acc Id:

XR_005357854

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	13,656,830 - 13,659,029 (+)	NCBI

RefSeq Acc Id:

XR_005392350

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	13,345,739 - 13,347,938 (+)	NCBI

RefSeq Acc Id:

XR_005425450

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	13,250,139 - 13,252,338 (+)	NCBI

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC111095453	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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