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Gene: LOC111090563 (uncharacterized LOC111090563) Canis lupus familiaris

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Symbol:

LOC111090563

Name:

uncharacterized LOC111090563

RGD ID:

13233230

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	2,455,330 - 2,459,366 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	3,462,769 - 3,466,805 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	2,261,960 - 2,266,010 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	1	2,307,404 - 2,311,446 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	2,257,900 - 2,261,931 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	2,428,057 - 2,432,093 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC111090563
29 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_002615172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005319350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005352989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005387592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005420544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_002615172

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	2,455,330 - 2,459,366 (-)	NCBI
Dog10K_Boxer_Tasha	1	3,462,769 - 3,466,805 (-)	NCBI

Sequence:

show sequence

TCTCTCCCCAGAATGGAAGGCATCAACCACACAATATAAAATAATACACCCATGGCCCTTGTTG
TATTCTCCGCAGTATCTAAGCACAACTGAAGTCACGCTGTTCATGCATCAACTTGTCCTACTGT
GCGGTTTGCTTGCTTATTGCCCCTCAGTCTCCCAAGGTCCCCAGAGAGAATTGGCTCTCCAGGC
AAAGGCCCTTGTCTCTGTGCCTTGTGCTATATGACCACGGAACACAGCTTGAGAAATATAATGT
GTGATGGAAAAAGGACATGGACATCCTGGTGAAAAATAATTGGATGGCTGTTTCCATGGAAACT
GATAGAGGGACATCACTGAATTCTTCTGAAGAATAGCAATTGATAATTGGAGCTTGGAACTGCG
TGCTCTGTGACAGTGGCTTGGATGGTGTCCTGATGTGAAGCATGTTCTTCTAACCTACAGAGCT
CTCCTCGCTCCTCCCTGAACAGCCAGCCCTGGTTGTACTCAGCCGAAATCAATGCAATCAATGA
AAACAGCACACAAGTTCCACTGAACTTTATAGTCTAACATAGGCCTGGAGCTTACAGTTTTATT
TATTTATTTATAAGATTTTATTTGTTTATTCATGAGAGACACAGAGAAAGAGGCAGAGACACCA
GCAGAGGAAGAAGCAGGCTCCCTGCAGGGAGCTGGATGTGAGACTTGATCCCAGAACCCGGGTG
GAAGGGCGATGCTCAACCGCTGAGCCACCCAGGCATCGCTGGAGCTTATAGTTTATACGGACGT
TTGGCAGGCAGCCCCGATGCAGCCTACCAGGCTCTTACTTGGGAGGCATCCTCCTCTATATTCG
CCTCCCCCCGCCCCCCCTCCCCCTTGCCCCACGCTGTTCACGCAGGCCTGGAGCTCCTTGCCCC
GGGTCAATACGGAGCGAGCCGGCTGCCAAACAGAAAGAGCAAGGACTTAAGCGTTTGTTTTCCC
ACAACGCCGTCTGGTATTTCCTGCAACTGCGAGTGAATCGGCTGTTACCCTAAAATAAGAAGTT
GAAGAGATATGAATGTCTTGGACAGCCTGCGCGCACACCCAGGGCAGCTCTTCTGTCTTTGTGA
AGATGCGCACAGACCAGCGAGCCCGTGATAACCACCTGCCGAGTCAGCCAACAGCTGCCAGGAC
TCCGCTCCCGCCGCGCCCGCGATCCCACCGCCTCGGCAGCCCCAGCCCGGCGCCTGCCCCTGCG
AGCGAACCCTGCACCCTGCGCCTGGGGCTGGGGGTGTGAGGGACGCACTCCCGTCACCCACTTC
TGTTGTAAGGCCCAGCAGTGTAACACGAGGAGGTTTTCTGGGCGCGCTTGACCTGTATTCGGGA
GCCGCTTAGGACGAGGTTCCTCTGGCTGCTCACAGAAGGCGAAGCCAGGGTTGCAAAGCATCAG
AAGGATTCAGGCACCTGGCCCTGAACTTGGAGGTGCGGCGTGGCAAGGGGCGTGGGGGCGAGCC
AAGGGGGACGGACGTCGCCCTACAACCATAAAGAACGAGGTCCTGCGGCAGCAGGAATGGGTTC
GGGAGGGAGCCCCAGCTGCACACGGCGCTGCTCGGAGAGCCCAGCTGGCCGTGCGCCCTACTGT
ACGGGCGCCCACTAATGCACGTTGTTGTGACCTCCTAATGTGTGATAACCTGCTCGCAACAAGA
AAACAAAGAGTCTCATGGAAAACTGCAGCCCCCAGAAATGAAAAGGAGGCGGCAGGCACATGAT
GCCTGGGTATTCTCTGACTGTTGGGAATTGTGATCCTTTTAAACAACGCTCTGCAGCTGAGCAG
TGAGGGTATTCGTTCTGGGGGTTTGACTTTTCATGAACAGAGTTCACACTCCAAAGTGGCCAAG
AGCCAGAGAGGGGGAATCAGAGACTATCCCTTCTCTGCCCAAAGGAGTTGCCATAAAGGATAGT
CGGGGTTGTGGGTTTGATTGGGGAGCATCTGAAGTCAACAGACCACCAGTGGTAGAATCAGAGG
TGCTGGGTGCCTTCCTGCAGGAAGGTGAGGCCGGGCACTGCCGTTCACCTGGGCATCTGGGAGC
CCTGGGCCTGAGGGGAGCACTCCGTTCAGTTATCAGCAAATGGAAAGCAAGCAATACTCAACCA
ATCTTTTCTGCCAAAAAGAGAAGGCCATACTACCCTGAAGGTCAGAAGAAAACCATCAGCAGAC
AGCTGGCTACTCTGCCTGACAATTTACCAATGTCCACTTTACACACAGCCTTTGAGAGACAGGA
GGCAGAGGTCAAGGTGCAGGGGAGAGGCCAGAAGATGTTTCCTGGAGACCACACATGAGGGCAA
GCGGCAGATGACGCAGGACTTATTCTCATCAGATTAAGCTTAATTAAAATCTGTCACATTAAAC
GGGCACAGGATTAATGCAAATGTTGAGGGGGGGGTCAATGCACCAAAGAGAGAACTGGAAATTT
ACTTTAGAAATTACTGCACTTTTTAGAGATTAGTGGCTTATTAGACATGA

hide sequence

RefSeq Acc Id:

XR_005319350

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	2,307,404 - 2,311,446 (-)	NCBI

RefSeq Acc Id:

XR_005352989

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	2,428,057 - 2,432,093 (-)	NCBI

RefSeq Acc Id:

XR_005387592

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	2,257,900 - 2,261,931 (-)	NCBI

RefSeq Acc Id:

XR_005420544

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	2,261,960 - 2,266,010 (-)	NCBI

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC111090563	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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