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Gene: LOC101970303 (putative olfactory receptor 10D4) Ictidomys tridecemlineatus

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Symbol:

LOC101970303

Name:

putative olfactory receptor 10D4

RGD ID:

12551015

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	105,790,458 - 105,802,485 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936743	38,020 - 50,047 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:22301074

Genomics

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013364825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JBPVTT010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013364825 ⟹ XP_013220279

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	105,790,458 - 105,802,485 (+)	NCBI
SpeTri2.0	NW_004936743	38,020 - 50,047 (+)	NCBI

Sequence:

show sequence

ATGTATATAGCGGATAAGTCAGCCTTAATTTACATCTCGGCAGATGATGTGACTTTTCCAAAGA
ACACAAAAATAGGAAGGTGGAGTGTGATTGTGACAGACACAATACCAGTACACTCATTGTCACC
AAATCACATTGTGCTCAATGAGTTCACTCCCCTGGGAATACCTCAGATGGAGGGAATGAAGACT
TTTCTCTTAGTTATCTTCTTTGTCATCTATCTCTTCACTCTGCTTGGAAATNGACTGATTTTTA
TAGCATTCCTTTCTTCCTCTATTCTTGAAACTCTCATGTATTTCTTCTTGGGATTTCTATCTAT
TGTTGTTGTTCGTTTCTCTTCCACAACTGCTCCCAAGATGTTGTTGTACCTCTCAGGGCAGGAA
CATGGCATCTCTTTCCAGGGCTGTGCTGCCCAGCTCTTCTTCTACCATTTCCTGGGCTGCACTG
AGTGTTTCCTGTACACAGTGATGGCCTATGACCGATTTGTTGCCATATGCTTTCCCTTGAGATA
CATGGTCATCATGAACCACAGAGTGTGCTCTGTCTTGGCCACAGGGACCTGGATGGGTGGCTGT
GTCCATGCCATTATCCTAACCTCGCTCACCTTCCAGTTGCCCTACTGTGGCTCCAACGAGGTGG
GCTATTACTTCTGTGATATACCTGCAGTGCTACCTCTAGCCTGTGAGGACACATCTCTGGCTCA
GAGAGTAGGTTTTACAAATGTTGGTATTTTGTCTCTCATTTGCTTTTTTCTCATCCTTGTTTCC
TACACTCGCATTGGGATCTCCATATCCAAAATTCGTTCAACAGAGGGCAGGCAAAGAGCATTCT
CCACCTGCAGTGCCCACCTGGCTGCAATTCTTTGTGCCTATGGGCCAGTCATCATCATCTACCT
ACAGCCCAACCCCAGGCCCCTGCTGGGTGCTGTTGTTCAGATCTTGAACAACCTTGTGACTCCC
ATGCTGAACCCACTTATATACAGCCTGAGGAATAAAGACGTAAAATCAGCCCTGAGGAATGTAT
TTTCCAAGAGAAGTCTTGCTCTGGAAAAATAA

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Protein Sequences


Protein RefSeqs	XP_013220279	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013220279 ⟸ XM_013364825

- Sequence:

show sequence

MYIADKSALIYISADDVTFPKNTKIGRWSVIVTDTIPVHSLSPNHIVLNEFTPLGIPQMEGMKT
FLLVIFFVIYLFTLLGNXLIFIAFLSSSILETLMYFFLGFLSIVVVRFSSTTAPKMLLYLSGQE
HGISFQGCAAQLFFYHFLGCTECFLYTVMAYDRFVAICFPLRYMVIMNHRVCSVLATGTWMGGC
VHAIILTSLTFQLPYCGSNEVGYYFCDIPAVLPLACEDTSLAQRVGFTNVGILSLICFFLILVS
YTRIGISISKIRSTEGRQRAFSTCSAHLAAILCAYGPVIIIYLQPNPRPLLGAVVQILNNLVTP
MLNPLIYSLRNKDVKSALRNVFSKRSLALEK

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC101970303	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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