LOC102152097 (RNA polymerase II elongation factor ELL2-like) - Rat Genome Database

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Gene: LOC102152097 (RNA polymerase II elongation factor ELL2-like) Canis lupus familiaris
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Symbol: LOC102152097
Name: RNA polymerase II elongation factor ELL2-like
RGD ID: 12293637
Description: INVOLVED IN DNA-templated transcription (inferred); transcription by RNA polymerase II (inferred); transcription elongation by RNA polymerase II (inferred); FOUND IN nucleus (inferred); transcription elongation factor complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X115,036,815 - 115,151,635 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX100,928,479 - 101,042,789 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X117,088,858 - 117,203,284 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1X114,210,122 - 114,324,389 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X116,416,717 - 116,531,763 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X116,147,107 - 116,261,415 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC102152097
918 total Variants

Expression

RNA-SEQ Expression

adipose tissue
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
5 2 16 11 2 4 2 12 12 10 13 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005641901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005641902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_038449224   ⟹   XP_038305152
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X117,088,858 - 117,203,284 (+)NCBI
RefSeq Acc Id: XM_038464810   ⟹   XP_038320738
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX100,928,479 - 101,042,789 (+)NCBI
RefSeq Acc Id: XM_038524881   ⟹   XP_038380809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X114,210,122 - 114,324,389 (+)NCBI
RefSeq Acc Id: XM_038588846   ⟹   XP_038444774
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X116,147,107 - 116,261,415 (+)NCBI
RefSeq Acc Id: XM_038651174   ⟹   XP_038507102
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X116,416,717 - 116,531,763 (+)NCBI
RefSeq Acc Id: XP_038380809   ⟸   XM_038524881
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038507102   ⟸   XM_038651174
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038305152   ⟸   XM_038449224
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LK17 (UniProtKB/TrEMBL),   A0A8I3PBG1 (UniProtKB/TrEMBL),   A0A8P0TE25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038320738   ⟸   XM_038464810
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LK17 (UniProtKB/TrEMBL),   A0A8I3PBG1 (UniProtKB/TrEMBL),   A0A8P0TE25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444774   ⟸   XM_038588846
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LK17 (UniProtKB/TrEMBL),   A0A8I3PBG1 (UniProtKB/TrEMBL),   A0A8P0TE25 (UniProtKB/TrEMBL)
Protein Domains
OCEL


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019057 UniProtKB/TrEMBL
  ENSCAFG00040014296 UniProtKB/TrEMBL
  ENSCAFG00845020221 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030264.5 UniProtKB/TrEMBL
  ENSCAFT00000087450.2 UniProtKB/TrEMBL
  ENSCAFT00040026347.1 UniProtKB/TrEMBL
  ENSCAFT00845035607 ENTREZGENE
  ENSCAFT00845035607.1 UniProtKB/TrEMBL
  ENSCAFT00845035641.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2670 UniProtKB/TrEMBL
  6.10.140.340 UniProtKB/TrEMBL
InterPro E3_ELL-like UniProtKB/TrEMBL
  ELL/occludin UniProtKB/TrEMBL
  ELL_N UniProtKB/TrEMBL
  Occludin_ELL UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene LOC102152097 ENTREZGENE
PANTHER PTHR23288 UniProtKB/TrEMBL
  RNA POLYMERASE II ELONGATION FACTOR ELL2-LIKE UniProtKB/TrEMBL
Pfam ELL UniProtKB/TrEMBL
  Occludin_ELL UniProtKB/TrEMBL
PROSITE OCEL UniProtKB/TrEMBL
Superfamily-SCOP occludin/ELL-like UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A8C0LK17 ENTREZGENE
  A0A8C0YYA8_CANLF UniProtKB/TrEMBL
  A0A8I3PBG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PCK8_CANLF UniProtKB/TrEMBL
  A0A8P0TE25 ENTREZGENE, UniProtKB/TrEMBL