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Gene: CTXN1 (cortexin 1) Canis lupus familiaris

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Symbol:

CTXN1

Name:

cortexin 1

RGD ID:

12290414

Description:

FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cortexin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTXN1 (cortexin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ctxn1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ctxn1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctxn1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTXN1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctxn1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTXN1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTXN1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctxn1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ctxn1 (cortexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	52,613,314 - 52,614,159 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	52,613,314 - 52,614,159 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	52,415,671 - 52,416,517 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	53,141,456 - 53,142,308 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	53,141,456 - 53,142,308 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	52,344,758 - 52,345,604 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	52,789,219 - 52,790,083 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	53,020,750 - 53,021,592 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

Additional References at PubMed

PMID:8336151

Genomics

Comparative Map Data

CTXN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	52,613,314 - 52,614,159 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	52,613,314 - 52,614,159 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	52,415,671 - 52,416,517 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	53,141,456 - 53,142,308 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	53,141,456 - 53,142,308 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	52,344,758 - 52,345,604 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	52,789,219 - 52,790,083 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	53,020,750 - 53,021,592 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CTXN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	7,924,491 - 7,926,135 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	7,924,491 - 7,926,135 (-)	Ensembl			hg38	GRCh38
GRCh37	19	7,989,376 - 7,991,020 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	7,895,384 - 7,897,029 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	7,895,383 - 7,897,029	NCBI
Celera	19	7,860,583 - 7,862,253 (-)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	7,659,679 - 7,660,245 (-)	NCBI		HuRef
CHM1_1	19	7,988,850 - 7,990,520 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	7,925,445 - 7,927,089 (-)	NCBI		T2T-CHM13v2.0

Ctxn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	4,307,646 - 4,309,274 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	4,307,660 - 4,309,274 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	4,257,646 - 4,259,274 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	4,257,660 - 4,259,274 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	4,257,646 - 4,259,274 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	4,257,660 - 4,259,210 (-)	NCBI		MGSCv36	mm8
Celera	8	4,458,235 - 4,459,863 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	1.99	NCBI

Ctxn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	7,408,308 - 7,409,919 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	7,408,309 - 7,409,919 (-)	Ensembl				GRCr8
mRatBN7.2	12	2,610,465 - 2,612,076 (-)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	12	3,258,542 - 3,260,151 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	3,882,133 - 3,883,742 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	2,645,147 - 2,646,758 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	12	8,255,917 - 8,257,526 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	12	8,657,792 - 8,659,401 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	12	6,102,502 - 6,104,111 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	12	18,058,455 - 18,060,064 (-)	NCBI		F344_StmMcwi
Rnor_6.0	12	2,534,212 - 2,535,823 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	2,534,212 - 2,535,822 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	4,687,159 - 4,688,770 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	1,531,822 - 1,533,433 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	4,425,998 - 4,427,609 (-)	NCBI		Celera
RGSC_v3.1	12	1,531,821 - 1,533,432 (+)	NCBI
Cytogenetic Map	12	p12	NCBI

Ctxn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955563	1,343,208 - 1,344,056 (+)	Ensembl
ChiLan1.0	NW_004955563	1,343,212 - 1,344,056 (+)	NCBI	ChiLan1.0	ChiLan1.0

CTXN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	12,607,274 - 12,608,922 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	11,724,473 - 11,726,116 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	7,225,738 - 7,227,412 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	8,078,377 - 8,100,527 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	8,079,181 - 8,079,429 (-)	Ensembl			panPan2	panpan1.1

Ctxn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	212,932,894 - 212,934,509 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	4,900,302 - 4,901,904 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	4,898,888 - 4,901,904 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTXN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	71,288,242 - 71,289,949 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	71,287,935 - 71,289,964 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	71,688,693 - 71,690,356 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CTXN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	7,375,855 - 7,377,536 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	7,376,664 - 7,376,912 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666081	436,768 - 438,459 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctxn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	887,005 - 888,430 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624828	887,006 - 888,524 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ctxn1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	2,390,844 - 2,392,449 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in CTXN1
8 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	19	13	3	6	3	6	30	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN373206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000000477 ⟹ ENSCAFP00000000431

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	52,613,314 - 52,614,159 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845050961 ⟹ ENSCAFP00845039951

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	20	53,141,456 - 53,142,308 (-)	Ensembl

RefSeq Acc Id:

NM_001039054 ⟹ NP_001034143

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	52,613,314 - 52,614,159 (-)	NCBI
Dog10K_Boxer_Tasha	20	52,415,671 - 52,416,517 (-)	NCBI
ROS_Cfam_1.0	20	53,141,456 - 53,142,308 (-)	NCBI
UMICH_Zoey_3.1	20	52,344,758 - 52,345,604 (-)	NCBI
UNSW_CanFamBas_1.0	20	52,789,219 - 52,790,083 (-)	NCBI
UU_Cfam_GSD_1.0	20	53,020,750 - 53,021,592 (-)	NCBI

Sequence:

show sequence

CTGAGCCCGTGCCGCCGCCGCCGCCGCCGCCGCCGGGGAGACGCCGAGAGCGGAGCCGGCGCGG
GTCCCGGAGGAGAGCGCAGCCACCGGGCGCTCGGTCCCCGTCCCGGTCGAGGCCAGGGGCGCGC
GGCGATGTGAGCCATGAGCGCGGCGTGGACGCTGTCCCCGGAGCCGCTGCCGCCGTCGACGGGG
CCGCCGGTGGGCGCGGGCCTGGACGCGGAGCAGCGCACGGTGTTCGCCTTCGTGCTGTGCCTGC
TCGTGGTGCTGGTGCTGCTGATGGTGCGCTGCGTGCGCATCCTGCTCGACCCCTACAGCCGCAT
GCCCGCCTCGTCCTGGACCGACCACAAGGAGGCGCTCGAGCGCGGGCAGTTCGACTACGCGCTG
GTCTGAGCCTGCCGGGGCCTCCCTCCGAGGGCCCGCCCGACGGGGGCGCCGCCTGGCAGGGACC
GCGCTCGGCACCCCGCCCCGCATGCTAGCCCGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001034143	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000000431.2
	ENSCAFP00030022522.1
	ENSCAFP00040032908.1
	ENSCAFP00845039951
	ENSCAFP00845039951.1

RefSeq Acc Id:	NP_001034143 ⟸ NM_001039054
- UniProtKB:	A0A8C0LEM5 (UniProtKB/TrEMBL), A0A8C0NCM3 (UniProtKB/TrEMBL), A0A8I3PXS1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAAWTLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRMPASS WTDHKEALERGQFDYALV hide sequence

Ensembl Acc Id:

ENSCAFP00000000431 ⟸ ENSCAFT00000000477

Ensembl Acc Id:

ENSCAFP00845039951 ⟸ ENSCAFT00845050961

Promoters

RGD ID:

13687067

Promoter ID:

EPDNEW_C5136

Type:

initiation region

Name:

CTXN1_1

Description:

cortexin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	52,614,197 - 52,614,257	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000023386	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030013917	UniProtKB/TrEMBL
	ENSCAFG00040020410	UniProtKB/TrEMBL
	ENSCAFG00845028842	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000000477.3	UniProtKB/TrEMBL
	ENSCAFT00030025788.1	UniProtKB/TrEMBL
	ENSCAFT00040037755.1	UniProtKB/TrEMBL
	ENSCAFT00845050961	ENTREZGENE
	ENSCAFT00845050961.1	UniProtKB/TrEMBL
InterPro	Cortexin	UniProtKB/TrEMBL
KEGG Report	cfa:611574	UniProtKB/TrEMBL
NCBI Gene	CTXN1	ENTREZGENE
PANTHER	CORTEXIN-1	UniProtKB/TrEMBL
	PTHR16736	UniProtKB/TrEMBL
Pfam	Cortexin	UniProtKB/TrEMBL
UniProt	A0A8C0LEM5	ENTREZGENE
	A0A8C0NCM3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PXS1	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:39722	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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