RGD:78569740 Rat Genome Database

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Variant: RGD:78569740 - Canis lupus familiaris

RGD ID:

78569740

Genic Status:

GENIC

Type:

SNV (SO:0001483)

Associated Genes:

SLC7A3

Reference Nucleotide:

Variant Nucleotide:

Position

Assembly	Chr	Position
CanFam3.1	X	55,287,457

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Breeds:

Chinese indigenous dogs, Kunming Dog, Lagotto Romagnolo, Tibetan Mastiff

Gene Symbol:

SLC7A3

Accession:

XM_005641454

Location:

EXON

Amino Acid Prediction:

W to C (nonsynonymous)

Amino Acid Position:

Polyphen Predictions

Prediction	Basis	Effect	Site	Score1	Score2	Diff	Number Observed	Structures	Protein ID	PDB ID	Inverted
benign	alignment			-1.852	-2.375	+0.523	113		XP_005641511		-

Amino Acid Sequence
(Calculated using NCBI transcript definition)

MLCQALRRFGQKLVRRRALEPGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSVLA
GLCYAEFGARVPRSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNHISQTLQGSISLHVPHVL
AEYPDFFAMGLVLLLTGLLALGASESALVTKVFTVVNLLVLGFVIISGFIKGDLHNWKLTEGDYKLTVAGLNDTYSLGPL
GSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQHSIPVGIVVSLFVCFLAYFGVSSALTLMMPYYQLQPESP
LPEAFLYTGWAPARYVVALGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFRVLARVHTGTHTPIVATVVSGIIAAFMAFL
FELTDLVDLMSIGTLLAYSLVAICVLILRYQPELKNEEDEVELQEENMAGAEKLTLQGLFCPLSSIPTPLSGQVVYVCSS
LVALLLTLLCLVLAQWPIPLVSGDPVWTVVVVLLLMLVTGITGVIWRQPQSSTPLHFKVPALPLLPLMSIFVNVYLMMQM
TAGTWARFGVWMLIGFAIYFGYGIQHSLEEVKSDQAPLKCRAKTVDLDLSNACTHSI*

Gene Symbol:

SLC7A3

Accession:

XM_005641455

Location:

EXON

Amino Acid Prediction:

W to C (nonsynonymous)

Amino Acid Position:

Polyphen Predictions

Prediction	Basis	Effect	Site	Score1	Score2	Diff	Number Observed	Structures	Protein ID	PDB ID	Inverted
probably damaging	alignment			-1.461	-4.544	+3.083	6		XP_005641512		-

Amino Acid Sequence
(Calculated using NCBI transcript definition)

MLCQALRRFGQKLVRRRALEPGMAETRLARCLSTLDLVALGVGSTLGAGTASVARAWSSAFDNLIGNHISQTLQGSISLH
VPHVLAEYPDFFAMGLVLLLTGLLALGASESALVTKVFTVVNLLVLGFVIISGFIKGDLHNWKLTEGDYKLTVAGLNDTY
SLGPLGSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQHSIPVGIVVSLFVCFLAYFGVSSALTLMMPYYQL
QPESPLPEAFLYTGWAPARYVVALGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFRVLARVHTGTHTPIVATVVSGIIAA
FMAFLFELTDLVDLMSIGTLLAYSLVAICVLILRYQPELKNEEDEVELQEENMAGAEKLTLQGLFCPLSSIPTPLSGQVV
YVCSSLVALLLTLLCLVLAQWPIPLVSGDPVWTVVVVLLLMLVTGITGVIWRQPQSSTPLHFKVPALPLLPLMSIFVNVY
LMMQMTAGTWARFGVWMLIGFAIYFGYGIQHSLEEVKSDQAPLKCRAKTVDLDLSNACTHSI*

Gene Symbol:

SLC7A3

Accession:

XM_549065

Location:

EXON

Amino Acid Prediction:

W to C (nonsynonymous)

Amino Acid Position:

Polyphen Predictions

Prediction	Basis	Effect	Site	Score1	Score2	Diff	Number Observed	Structures	Protein ID	PDB ID	Inverted
benign	alignment			-1.852	-2.375	+0.523	113		XP_549065		-

Amino Acid Sequence
(Calculated using NCBI transcript definition)

MLCQALRRFGQKLVRRRALEPGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSVLA
GLCYAEFGARVPRSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNHISQTLQGSISLHVPHVL
AEYPDFFAMGLVLLLTGLLALGASESALVTKVFTVVNLLVLGFVIISGFIKGDLHNWKLTEGDYKLTVAGLNDTYSLGPL
GSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQHSIPVGIVVSLFVCFLAYFGVSSALTLMMPYYQLQPESP
LPEAFLYTGWAPARYVVALGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFRVLARVHTGTHTPIVATVVSGIIAAFMAFL
FELTDLVDLMSIGTLLAYSLVAICVLILRYQPELKNEEDEVELQEENMAGAEKLTLQGLFCPLSSIPTPLSGQVVYVCSS
LVALLLTLLCLVLAQWPIPLVSGDPVWTVVVVLLLMLVTGITGVIWRQPQSSTPLHFKVPALPLLPLMSIFVNVYLMMQM
TAGTWARFGVWMLIGFAIYFGYGIQHSLEEVKSDQAPLKCRAKTVDLDLSNACTHSI*

Kunming Dog (KM9)	Chinese indigenous dogs (LJ4)	Chinese indigenous dogs (YJ9)	Chinese indigenous dogs (LJ8)	Lagotto Romagnolo (LR390)	Lagotto Romagnolo (LR433)
Tibetan Mastiff (TM10)	Chinese indigenous dogs (YJ1)

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Variant: RGD:78569740 - Canis lupus familiaris