RGD:78238589 Rat Genome Database

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Variant: RGD:78238589 -  Canis lupus familiaris

RGD ID: 78238589
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: SLC7A3  
Reference Nucleotide: T
Variant Nucleotide: A
Position
Assembly Chr Position
CanFam3.1 X 55,287,287
JBrowse: View Region in Genome Browser (JBrowse)
Model
Breeds: Chinese indigenous dogs, Tibetan Mastiff




Gene Symbol:SLC7A3
Accession:XM_005641454
Location:EXON
Amino Acid Prediction: D to V (nonsynonymous)
Amino Acid Position: 60
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment     -1.280 -3.529 +2.249 116   XP_005641511   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MLWQALRRFGQKLVRRRALEPGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKVKAGPSIVICFLVAALSSVLA
GLCYAEFGARVPRSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNHISQTLQGSISLHVPHVL
AEYPDFFAMGLVLLLTGLLALGASESALVTKVFTVVNLLVLGFVIISGFIKGDLHNWKLTEGDYKLTVAGLNDTYSLGPL
GSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQHSIPVGIVVSLFVCFLAYFGVSSALTLMMPYYQLQPESP
LPEAFLYTGWAPARYVVALGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFRVLARVHTGTHTPIVATVVSGIIAAFMAFL
FELTDLVDLMSIGTLLAYSLVAICVLILRYQPELKNEEDEVELQEENMAGAEKLTLQGLFCPLSSIPTPLSGQVVYVCSS
LVALLLTLLCLVLAQWPIPLVSGDPVWTVVVVLLLMLVTGITGVIWRQPQSSTPLHFKVPALPLLPLMSIFVNVYLMMQM
TAGTWARFGVWMLIGFAIYFGYGIQHSLEEVKSDQAPLKCRAKTVDLDLSNACTHSI*

Gene Symbol:SLC7A3
Accession:XM_549065
Location:EXON
Amino Acid Prediction: D to V (nonsynonymous)
Amino Acid Position: 60
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment     -1.280 -3.529 +2.249 116   XP_549065   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MLWQALRRFGQKLVRRRALEPGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKVKAGPSIVICFLVAALSSVLA
GLCYAEFGARVPRSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNHISQTLQGSISLHVPHVL
AEYPDFFAMGLVLLLTGLLALGASESALVTKVFTVVNLLVLGFVIISGFIKGDLHNWKLTEGDYKLTVAGLNDTYSLGPL
GSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQHSIPVGIVVSLFVCFLAYFGVSSALTLMMPYYQLQPESP
LPEAFLYTGWAPARYVVALGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFRVLARVHTGTHTPIVATVVSGIIAAFMAFL
FELTDLVDLMSIGTLLAYSLVAICVLILRYQPELKNEEDEVELQEENMAGAEKLTLQGLFCPLSSIPTPLSGQVVYVCSS
LVALLLTLLCLVLAQWPIPLVSGDPVWTVVVVLLLMLVTGITGVIWRQPQSSTPLHFKVPALPLLPLMSIFVNVYLMMQM
TAGTWARFGVWMLIGFAIYFGYGIQHSLEEVKSDQAPLKCRAKTVDLDLSNACTHSI*

Gene Symbol:SLC7A3
Accession:XM_005641455
Location:INTRON