RGD:52677307 Rat Genome Database

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Variant: RGD:52677307 -  Rattus norvegicus

RGD ID: 52677307
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Gtf2a2  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
Rnor_5.0 8 76,649,881
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Gtf2a2
Accession:NM_053345
Location:EXON
Amino Acid Prediction: S to N (nonsynonymous)
Amino Acid Position: 18
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.422 -3.372 +1.950 91   NP_445797   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAYQLYRNTTLGNSLQENLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVE
FREVTELIKVDKVKIVACDGKNTGSNTTE*
ACI/EurMcwi (MCW) FHL/EurMcwi (MCW)