RGD:51895552 Rat Genome Database

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Variant: RGD:51895552 -  Rattus norvegicus

RGD ID: 51895552
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Aipl1  Pimreg  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
Rnor_5.0 10 58,355,398
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Aipl1
Accession:NM_021590
Location:5UTRS;INTRON

Gene Symbol:Pimreg
Accession:NM_001113781
Location:EXON
Amino Acid Prediction: G to S (nonsynonymous)
Amino Acid Position: 63
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.010 -2.292 +1.282 99   NP_001107253   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MASQWQGMRTSVRRRSLLKEEQLEKEVTRSAGGHLETGPLGSLCRQFQRRLPLRAVSLNLGNSPSWKRLETPEPEQQGLQ
AAARSAKSALGAMSQRIQESCQSGTKWLMETQVRVRRKRGAQKDRGSPPPSLSPKNTRLCRANRDARGGGLPRLSGQMGP
HAHRRQRLRREAALRSPCSSTDPLCSPSESDSDLEPVGAGIQHLQKLSQKLDKAIKAEESGDMTVSLISE*

Gene Symbol:Pimreg
Accession:XM_006246760
Location:EXON
Amino Acid Prediction: G to S (nonsynonymous)
Amino Acid Position: 63
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.010 -2.292 +1.282 99   XP_006246822   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MASQWQGMRTSVRRRSLLKEEQLEKEVTRSAGGHLETGPLGSLCRQFQRRLPLRAVSLNLGNSPSWKRLETPEPEQQGLQ
AAARSAKSALGAMSQRIQESCQSGTKWLMETQVRVRRKRGAQKDRGSPPPSLSPKNTRLCRANRDARGGGLPRLSGQMGP
HAHRRQRLRREAALRSPCSSTDPLCSPSESDSDLEPVGAGIQHLQKLSQKLDKAIKAEESGDMTVSLISE*