RGD:48315339 Rat Genome Database

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Variant: RGD:48315339 -  Rattus norvegicus

RGD ID: 48315339
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Lgi3  
Reference Nucleotide: A
Variant Nucleotide: C
Position
Assembly Chr Position
Rnor_5.0 15 55,945,527
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Lgi3
Accession:NM_001107277
Location:EXON
Amino Acid Prediction: H to P (nonsynonymous)
Amino Acid Position: 86
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.794 -3.657 +1.863 41   NP_001100747   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MARLRARRGPMCRLLVLSTLGFYLMLQASAKRPPKTPPCPPSCSCTRDTAFCVDSKSVPKNLPSEVISLTLVNAAFSEIQ
DGAFSPLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFIENNDIWGLSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLD
ILSDLDLRGNALNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFL
YSSDLYLALAQPGASACTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDGQLYVVVAQLFGGSYIYHWDPNTTRFTKLQD
IDPQRVRKPNDLEAFRIDGDWFFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDGEGKPRLIVSSSSQAPV
IYQWSRTQKQFVAQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGHRY
LALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA*
ACI/EurMcwi (MCW) FHH/EurMcwi (MCW) SR/JrHsd (MCW)