RGD:126699547 Rat Genome Database

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Variant: RGD:126699547 -  Rattus norvegicus

RGD ID: 126699547
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Gtf2a2  
Reference Nucleotide: A
Variant Nucleotide: T
Position
Assembly Chr Position
Rnor_6.0 8 76,427,630
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Gtf2a2
Accession:NM_053345
Location:EXON
Amino Acid Prediction: Q to L (nonsynonymous)
Amino Acid Position: 39
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.450 -3.423 +1.973 89   NP_445797   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLLFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVE
FREVTELIKVDKVKIVACDGKNTGSNTTE*
M520/N (MCW)