rs105305578 Rat Genome Database

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Variant: rs105305578 - Rattus norvegicus

RGD ID:

114850374

RS ID:

rs105305578

Genic Status:

GENIC

Type:

SNV (SO:0001483)

Associated Genes:

Prkd1

Reference Nucleotide:

Variant Nucleotide:

Position

Assembly	Chr	Position
Rnor_6.0	6	71,087,728

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Gene Symbol:

Prkd1

Accession:

NM_001276715

Location:

EXON

Amino Acid Prediction:

E to D (nonsynonymous)

Amino Acid Position:

368

Polyphen Predictions

Prediction	Basis	Effect	Site	Score1	Score2	Diff	Number Observed	Structures	Protein ID	PDB ID	Inverted
probably damaging	alignment		NO	-1.255	-2.529	+1.274	99		NP_001263644		-

Amino Acid Sequence
(Calculated using NCBI transcript definition)

MSAPPLLRPPSPLLPAAAAVAAAAAALVPGSGPAPFPAPGAAPAGGISFHLQIGLSREPVLLLQDSSGDYSLAHVREMAC
SIVDQKFPECGFYGLYDKILLFRHDPASENILQLVKIASDIQEGDLIEVVLSASATFEDFQIRPHALFVHSYRAPAFCDH
CGEMLWGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRRRRLSNVSLTGLGTVRTASAEFSTSAPDEPLLSPVSPGFEQK
SPSESFIGREKRSNSQSYVGRPIQLDKLLMSKVKVPHTFVIHSYTRPTVCQFCKKLLKGLFRQGLQCKDCRFNCHKRCAP
KVPNNCLGEVTINGELLSPGAESDVVMEEGSDDNDSERNSGLMDDMDDAMVQDTEMALAEGQSDGAEMQDPDADQEDSNR
TISPSTSNNIPLMRVVQSVKHTKRRSSTVMKEGWMVHYTSKDTLRKRHYWRLDSKSITLFQNDTGSRYYKEIPLSEILCL
EPAKPSALIPTGANPHCFEITTANVVYYVGENVVNPSSPPPNNSVPPSGIGTDVARMWEVAIQHALMPVIPKGSSVGSGT
NSHKDISVSISVSNSQIQENVDISTVYQIFPDEVLGSGQFGIVYGGKHRKTGRDVAIKIIDKLRFPTKQESQLRNEVAIL
QNLHHPGVVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPEHITKFLITQILVALRHLHFKNIVHCDLKPENVLL
ASADPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDIHDQIQ
NAAFMYPPNPWKEISHEAIDLINNLLQVKMRKRYSVDKTLSHPWLQDYQTWLDLRELECRIGERYITHESDDSRWEQYAG
EQGLQYPAHLINLSASHGDSPEAEEREMKALSERVSIL*

ACI/EurMcwi (MCW)	ACI/N (MCW)	M520/N (MCW)	WKY/N (MCW)	COP/CrCrl (MCW & UW)	SR/JrHsd (MCW)
SS/JrHsdMcwi (MCW)	Buf/N (MCW)	ACI/EurMcwi (RGD)	LL/MavRrrc (RGD)	WKY/NCrl (RGD)	WN/N (MCW)
LH/MavRrrc (RGD)	LN/MavRrrc (RGD)	MHS/Gib (RGD)	SR/JrHsd (RGD)	SS/JrHsdMcwi (RGD)	ACI/EurMcwi (2019)
ACI/N (2020)	LL/MavRrrcAek (2020)	M520/NRrrcMcwi (2019)	M520/N (2020)	MWF/Hsd (2019)	PVG/Seac (2019)
WKY/Gcrc (RGD)	WKY/NHsd (RGD)	BUF/N (2020)	DA/OlaHsd (2019)	LH/MavRrrcAek (2020)	LN/MavRrrcAek (2020)
WN/N (2020)	SR/JrHsd (2020)	SS/JrHsdMcwi (2019)	WKY/NCrl (2019)	WKY/N (2020)

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Variant: rs105305578 - Rattus norvegicus