rs63750197 Rat Genome Database

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Variant: rs63750197 - Homo sapiens

RGD ID:

8598088

RS ID:

rs63750197

ClinVar ID:

CV23891

Genic Status:

GENIC

Type:

SNV (SO:0001483)

Associated Genes:

PSEN2

Reference Nucleotide:

Variant Nucleotide:

Position

Assembly	Chr	Position
GRCh37	1	227,073,271
GRCh38	1	226,885,570

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

ClinVar Data

HGVS Name(s)	Last Evaluated	Molecular Consequence	Clinical Significance	Age of Onset	Prevalence	Trait Synonyms
NC_000001.11:g.226885570C>T NC_000001.10:g.227073271C>T NP_000438.2:p.Ser130Leu NM_012486.3:c.389C>T More...	11/26/2020	missense\|missense variant	pathogenic\|benign\|likely benign\|uncertain significance\|not provided	adulthood\|all ages\|variable	1-5 / 10 000\|1-9 / 100 000	AllHighlyPenetrant; Alzheimer disease familial type 4; Alzheimer's disease; none provided; Presenile and senile dementia; PSEN2-related condition

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (IAGP)

Alzheimer's disease 4 (IAGP)

dilated cardiomyopathy 1V (IAGP)

Presenile and Senile Dementia (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Human Phenotype

Alzheimer disease (IAGP)

Variant Details

Variant Transcripts

Gene Symbol:	PSEN2
Accession:	XM_017001836
Location:	EXON
Amino Acid Prediction:	S to L (nonsynonymous)
Amino Acid Position:	130

Amino Acid Sequence (Calculated using NCBI transcript definition)
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELT LKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPLVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMA LVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYD PEMEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCL TLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI*

Gene Symbol:	PSEN2
Accession:	NM_012486
Location:	EXON
Amino Acid Prediction:	S to L (nonsynonymous)
Amino Acid Position:	130

Amino Acid Sequence (Calculated using NCBI transcript definition)
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELT LKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPLVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMA LVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYD PEMEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCL TLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI*

Gene Symbol:	PSEN2
Accession:	NM_000447
Location:	EXON
Amino Acid Prediction:	S to L (nonsynonymous)
Amino Acid Position:	130

Amino Acid Sequence (Calculated using NCBI transcript definition)
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELT LKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPLVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMA LVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYD PEMEEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLC LTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI*

Gene Symbol:	PSEN2
Accession:	XM_047425596
Location:	EXON
Amino Acid Prediction:	S to L (nonsynonymous)
Amino Acid Position:	130

Amino Acid Sequence (Calculated using NCBI transcript definition)
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELT LKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPLVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMA LVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYD PEMEEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLC LTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI*

Gene Symbol:	PSEN2
Accession:	XM_047425597
Location:	EXON
Amino Acid Prediction:	S to L (nonsynonymous)
Amino Acid Position:	130

Amino Acid Sequence (Calculated using NCBI transcript definition)
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELT LKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPLVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMA LVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYD PEMEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCL TLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI*

Gene Symbol:	PSEN2
Accession:	XM_005273199
Location:	EXON
Amino Acid Prediction:	S to L (nonsynonymous)
Amino Acid Position:	130

Amino Acid Sequence (Calculated using NCBI transcript definition)
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELT LKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPLVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMA LVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYD PEMEEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLC LTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI*

Gene Symbol:	PSEN2
Accession:	XM_017001835
Location:	EXON
Amino Acid Prediction:	S to L (nonsynonymous)
Amino Acid Position:	130

Amino Acid Sequence (Calculated using NCBI transcript definition)
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELT LKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPLVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMA LVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYD PEMEEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLC LTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI*

Gene Symbol:	PSEN2
Accession:	XM_047425601
Location:	EXON
Amino Acid Prediction:	S to L (nonsynonymous)
Amino Acid Position:	130

Amino Acid Sequence (Calculated using NCBI transcript definition)
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELT LKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPLVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMA LVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYD PEMEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCL TLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI*

Gene Symbol:	PSEN2
Accession:	XR_007061980
Location:	EXON;NON-CODING

Gene Symbol:	PSEN2
Accession:	XR_949150
Location:	EXON;NON-CODING

Gene Symbol:	PSEN2
Accession:	XR_007061979
Location:	EXON;NON-CODING

Gene Symbol:	PSEN2
Accession:	XR_001737316
Location:	EXON;NON-CODING

Variant Samples

ClinVar GRCh37

ClinVar GRCh38

Additional References at PubMed

PMID:14623725	PMID:15663477	PMID:17186461	PMID:17345043	PMID:22503161	PMID:23383383	PMID:23558482	PMID:23861362	PMID:24880964	PMID:25104557	PMID:25604855	PMID:25937274
PMID:26242991	PMID:26467025	PMID:26507310	PMID:26899768	PMID:28492532	PMID:30045758	PMID:32032730	PMID:32917274

Additional Information

External Database Links

Database	Acc Id	Source(s)
ClinVar	RCV000009400	CLINVAR
	RCV000009401	CLINVAR
	RCV000084261	CLINVAR
	RCV000172588	CLINVAR
	RCV001642203	CLINVAR
	RCV003934816	CLINVAR
dbSNP (RS)	rs63750197	CLINVAR
MedGen	C0002395	CLINVAR
	C1847200	CLINVAR
	C3150958	CLINVAR
	C3661900	CLINVAR
	CN169374	CLINVAR
NCBI Gene	PSEN2	CLINVAR
OMIM	600759	CLINVAR
	606889	CLINVAR
	613697	CLINVAR
OMIM Allele	600759.0008	CLINVAR
SNOMED CT	26929004	CLINVAR

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Variant: rs63750197 - Homo sapiens

Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar

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Variant: rs63750197 - Homo sapiens

Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar