rs138042437 Rat Genome Database

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Variant: rs138042437 -  Homo sapiens

RGD ID: 40816063
RS ID: rs138042437
ClinVar ID: CV967117
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: CASC19  
Reference Nucleotide: A
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh37 8 128,208,369
GRCh38 8 127,196,124
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Clinical Significance Trait Synonyms
NC_000008.11:g.127196124A>G
NC_000008.10:g.128208369A>G
 association Hereditary prostate cancer
Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1457259_H GCST003586 Prostate cancer 2,511 European ancestry cases, 1,382 European ancestry controls G 0.015 2E-8 7.699 rs138042437 13.25 prostate carcinoma (EFO:0001663)
 PMID:27262462
GWAS1618502_H GCST90428117 Prostate cancer 7,822 European ancestry cases, 144,172 European ancestry controls G NR 1E-37 37 rs138042437 1.01234 PMID:38538606

Variant Details
Variant Transcripts
Gene Symbol:CASC19
Accession:NR_120364
Location:INTRON;NON-CODING

Variant Samples
Additional References at PubMed
PMID:32251286  


Additional Information

Database Acc Id Source(s)
ClinVar RCV001257965 CLINVAR
dbSNP (RS) rs138042437 CLINVAR
GWAS Catalog GCST003586 GWAS Catalog
MedGen C2931456 CLINVAR
NCBI Gene CASC19 CLINVAR
OMIM 176807 CLINVAR
  617703 CLINVAR
SNOMED CT 715412008 CLINVAR