RGD:156165873 Rat Genome Database

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Variant: RGD:156165873 -  Homo sapiens

RGD ID: 156165873
ClinVar ID: CV2184712
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: SNX10  SNX10-AS1  
Reference Nucleotide: C
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh37 7 26,412,117
GRCh38 7 26,372,497
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_001199835.1:c.531C>G
NM_001318199.3:c.531C>G
NM_013322.3:c.531C>G
NM_001318198.1:c.609C>G
More... 		04/10/2022 non-coding transcript variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:SNX10
Accession:NM_001199838
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 93
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGK
KENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:NM_001362753
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 203
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MILMEGIGCMRHSSLTRQPKLPYRSLASARGGLQEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRY
REFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACV
SGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:NM_013322
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 177
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKN
LFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEED
EEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:XM_006715712
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 177
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKN
LFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEED
EEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:NM_001318199
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 177
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKN
LFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEED
EEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:NM_001199835
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 177
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKN
LFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEED
EEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:XM_047420283
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 137
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF
LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQE
S*

Gene Symbol:SNX10
Accession:NM_001362754
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 203
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MILMEGIGCMRHSSLTRQPKLPYRSLASARGGLQEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRY
REFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACV
SGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:NM_001199837
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 174
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MMPLQEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFF
NMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEG
KKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:NM_001318198
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 203
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MILMEGIGCMRHSSLTRQPKLPYRSLASARGGLQEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRY
REFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACV
SGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10
Accession:XM_047420282
Location:EXON
Amino Acid Prediction: S to S (synonymous)
Amino Acid Position: 203
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MILMEGIGCMRHSSLTRQPKLPYRSLASARGGLQEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRY
REFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACV
SGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES*

Gene Symbol:SNX10-AS1
Accession:NR_136272
Location:EXON;NON-CODING

Gene Symbol:SNX10-AS1
Accession:NR_136271
Location:EXON;NON-CODING

Gene Symbol:SNX10-AS1
Accession:NR_136270
Location:EXON;NON-CODING

Variant Samples
Additional References at PubMed
PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV003057068 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene SNX10 CLINVAR
  SNX10-AS1 CLINVAR
OMIM 614780 CLINVAR