Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: SHR.WKY-(D1Rat420-D1Rat278)/Njs

Symbol: SHR.WKY-(D1Rat420-D1Rat278)/Njs
Strain: SHR.WKY-(D1Rat420-D1Rat278)
Substrain: Njs
RGD ID: 1641858
Citation ID: RRID:RGD_1641858
Ontology ID: RS:0001426
Also Known As: Sisa1b; SHR.WKY-(D1Rat420-D1Rat278)/Njs; SHR.WKY-(D1Rat420-D1Rat278)/Njs
Type: congenic
Available Source: Not Available
Origination: Department of Cardiovascular Sciences, University of Leicester, Glenfield Hospital, UK
Description: This is a congenic substrain developed by crossing SHR.WKY-(D1Wox34-D1Rat164)/Njs to SHR to get F2 which were again crossed with SHR to duplicate the recombinant region
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21164,310,419 - 165,279,420RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01174,905,726 - 175,980,872RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01181,904,343 - 182,965,674RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41167,931,247 - 168,930,831RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
systolic blood pressure

References

References - curated
# Reference Title Reference Citation
1. Genetic dissection of a blood pressure quantitative trait locus on rat chromosome 1 and gene expression analysis identifies SPON1 as a novel candidate hypertension gene. Clemitson JR, etal., Circ Res. 2007 Apr 13;100(7):992-9. Epub 2007 Mar 1.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Rat420)
Rat AssemblyChrPosition (strand)Source
GRCr81173,745,165 - 173,745,308 (+)Marker Load Pipeline
mRatBN7.21164,310,419 - 164,310,563 (+)MAPPER
Rnor_6.01174,905,726 - 174,905,869NCBI
Rnor_5.01181,904,343 - 181,904,486UniSTS
RGSC_v3.41167,931,247 - 167,931,390RGD
RGSC_v3.41167,931,247 - 167,931,390UniSTS
RGSC_v3.11168,041,910 - 168,042,053RGD
Celera1162,206,508 - 162,206,651UniSTS
SHRSP x BN Map177.8599RGD
SHRSP x BN Map177.8599UniSTS
Cytogenetic Map1q33UniSTS

Flank 2 / 1 (D1Rat278)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21165,279,278 - 165,279,420 (+)MAPPER
Rnor_6.01175,980,731 - 175,980,872NCBI
Rnor_5.01182,965,533 - 182,965,674UniSTS
RGSC_v3.41168,930,689 - 168,930,831RGD
RGSC_v3.41168,930,690 - 168,930,831UniSTS
RGSC_v3.11169,041,353 - 169,041,494RGD
Celera1163,167,625 - 163,167,766UniSTS
RH 3.4 Map11330.1UniSTS
RH 3.4 Map11330.1RGD
SHRSP x BN Map183.4799UniSTS
SHRSP x BN Map183.4799RGD

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 SHR.WKY-(D1Rat420-D1Rat278)/Njs    SHR.WKY-(D1Rat420-D1Rat278)/Njs    Name updated 68913 APPROVED
2013-08-28 SHR.WKY-(D1Rat420-D1Rat278)/Njs    SHR.WKY-(D1Rat420-D1Rat278)/Njs    Name updated 68913 APPROVED