GWAS866795_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS866795_H (cholesterol esters in large LDL measurement QTL GWAS866795 (human)) Homo sapiens

Symbol: GWAS866795_H
Name: cholesterol esters in large LDL measurement QTL GWAS866795 (human)
RGD ID: 407217819
Trait: cholesterol esters in large LDL measurement
Measurement Type: blood low density lipoprotein phospholipid level   (CMO:0001568)    
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS866795_HHumanblood low density lipoprotein phospholipid level  IAGPrs8111874405850206Based on the EFO term IDGWAS_CATALOGPMID:38448586

Experimental Factor Annotations    Click to see Annotation Detail View
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs8111874) No map positions available.


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST003626 diarrhoeal disease at age 1 2,693 European ancestry cases, 3,065 European ancestry controls G 0.57 8E-14 13.097 rs8111874 1.29 Diarrhea (HP:0002014)
 PMID:27559109
None Available GCST90092880 Linoleic acid levels 115,006 European ancestry individuals G 0.535711 6E-9 8.222 rs8111874 0.0239534 linoleic acid measurement (EFO:0006807)
 PMID:35213538
None Available GCST90302049 Total lipid levels in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 4E-11 10.398 rs8111874 0.0278 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:38448586
None Available GCST90302013 Total lipids in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 1E-12 12 rs8111874 0.0299 total lipids in large LDL (EFO:0022163)
 PMID:38448586
None Available GCST90302045 Cholesterol esters in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4104 9E-10 9.046 rs8111874 0.0259 cholesterol esters in medium LDL measurement (EFO:0022186)
 PMID:38448586
None Available GCST90302051 Phospholipids in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 1E-11 11 rs8111874 0.0286 phospholipids in medium LDL measurement (EFO:0022183)
 PMID:38448586
None Available GCST90302075 Serum total cholesterol levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4108 1E-10 10 rs8111874 0.0271 total cholesterol measurement (EFO:0004574)
 PMID:38448586
None Available GCST90301983 Phospholipids in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4124 1E-12 12 rs8111874 0.0297 phospholipids in IDL measurement (EFO:0022164)
 PMID:38448586
None Available GCST90301991 Total cholesterol levels in LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 3E-10 9.523 rs8111874 0.0266 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
None Available GCST90301975 Total Cholesterol in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4108 1E-11 11 rs8111874 0.0285 total cholesterol in IDL (EFO:0022184)
 PMID:38448586
None Available GCST90301977 Cholesterol esters in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4108 4E-12 11.398 rs8111874 0.0291 esterified cholesterol measurement (EFO:0008589)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:38448586
None Available GCST90302007 Total cholesterol in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 2E-11 10.699 rs8111874 0.0284 total cholesterol in large LDL (EFO:0022167)
 PMID:38448586
None Available GCST90302009 Cholesterol esters in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 1E-11 11 rs8111874 0.0287 cholesterol esters in large LDL measurement (EFO:0022165)
 PMID:38448586
None Available GCST90302011 Free cholesterol in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4106 2E-10 9.699 rs8111874 0.0269 free cholesterol in large LDL measurement (EFO:0022176)
 PMID:38448586
None Available GCST90302043 Total cholesterol in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 1E-9 9 rs8111874 0.0258 total cholesterol in medium LDL (EFO:0022185)
 PMID:38448586
None Available GCST90301979 Free cholesterol in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4107 3E-10 9.523 rs8111874 0.0265 free cholesterol in IDL measurement (EFO:0022181)
 PMID:38448586
None Available GCST90302014 Concentration of large LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 8E-13 12.097 rs8111874 0.0301 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
None Available GCST90301957 Esterified cholesterol levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4123 1E-9 9 rs8111874 0.0254 esterified cholesterol measurement (EFO:0008589)
 PMID:38448586
None Available GCST90301963 Free cholesterol levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4108 3E-12 11.523 rs8111874 0.0292 free cholesterol measurement (EFO:0008591)
 PMID:38448586
None Available GCST90302050 Concentration of medium LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 2E-11 10.699 rs8111874 0.0283 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
None Available GCST90302015 Phospholipids in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4105 2E-12 11.699 rs8111874 0.0296 phospholipids in large LDL measurement (EFO:0022174)
 PMID:38448586
Database Acc Id Source(s)
GWAS Catalog GCST90301975 GWAS Catalog
  GCST90302009 GWAS Catalog
  GCST90302051 GWAS Catalog

RGD Curation Notes
Note Type Note Reference