Eef1a1l1 (eukaryotic translation elongation factor 1 alpha 1 like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Eef1a1l1 (eukaryotic translation elongation factor 1 alpha 1 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Eef1a1l1
Name: eukaryotic translation elongation factor 1 alpha 1 like 1
RGD ID: 2322143
Description: Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Orthologous to human EEF1A1P5 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 5).
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: elongation factor 1-alpha 1-like; eukaryotic translation elongation factor 1 alpha 1-like; LOC100360413; LOC100911991
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X153,525,380 - 153,527,134 (+)NCBIGRCr8
mRatBN7.2X148,480,780 - 148,482,536 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX148,480,790 - 148,482,536 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX148,480,789 - 148,482,555 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X153,490,061 - 153,491,807 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX153,490,182 - 153,491,837 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX154,916,379 - 154,918,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01149,215,978 - 149,217,724 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X156,022,812 - 156,024,560 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1132,916,094 - 132,917,840 (-)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eef1a1l1Rattranslation involved_inIEAUniProtKB-KW:KW-06481600115GO_REF:0000043UniProtGO_REF:0000043
Eef1a1l1Rattranslation involved_inIBACGD:CAL0000176993 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Eef1a1l1Rattranslational elongation involved_inIEAUniProtKB-KW:KW-02511600115GO_REF:0000043UniProtGO_REF:0000043
Eef1a1l1Rattranslational elongation involved_inIBAMGI:1096317 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Eef1a1l1Rattranslational elongation involved_inIEAInterPro:IPR0045391600115GO_REF:0000002InterProGO_REF:0000002

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eef1a1l1RatGTP binding enablesIEAUniRule:UR0000000701600115GO_REF:0000104UniProtGO_REF:0000104
Eef1a1l1RatGTP binding enablesIEAUniProtKB-KW:KW-03421600115GO_REF:0000043UniProtGO_REF:0000043
Eef1a1l1RatGTP binding enablesIEAInterPro:IPR000795 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Eef1a1l1RatGTPase activity enablesIEAUniRule:UR0000000701600115GO_REF:0000104UniProtGO_REF:0000104
Eef1a1l1RatGTPase activity enablesIEAInterPro:IPR0007951600115GO_REF:0000002InterProGO_REF:0000002
Eef1a1l1RatGTPase activity enablesIBAPANTHER:PTN000561878 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Eef1a1l1Ratnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Eef1a1l1Rattranslation elongation factor activity enablesIEAUniRule:UR0000000701600115GO_REF:0000104UniProtGO_REF:0000104
Eef1a1l1Rattranslation elongation factor activity enablesIEAUniProtKB-KW:KW-02511600115GO_REF:0000043UniProtGO_REF:0000043
Eef1a1l1Rattranslation elongation factor activity enablesIBAMGI:1096317 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Eef1a1l1Rattranslation elongation factor activity enablesIEAInterPro:IPR0045391600115GO_REF:0000002InterProGO_REF:0000002
1 to 11 of 11 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


.

.
Variants in Eef1a1l1
36 total Variants

The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
18 21 65 163 152 150 88 49 88 12 346 159 123 65 89 62


RefSeq Transcripts XM_039100128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085224   ⟹   ENSRNOP00000070777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX148,480,790 - 148,482,536 (-)Ensembl
Rnor_6.0 EnsemblX154,916,379 - 154,918,095 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089027   ⟹   ENSRNOP00000070901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX148,480,789 - 148,482,555 (+)Ensembl
Rnor_6.0 EnsemblX153,490,182 - 153,491,837 (-)Ensembl
RefSeq Acc Id: XM_039100128   ⟹   XP_038956056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X153,525,380 - 153,527,134 (+)NCBI
mRatBN7.2X148,480,780 - 148,482,536 (+)NCBI
Protein RefSeqs XP_038956056 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016947.4
  ENSRNOP00000070901
  ENSRNOP00000070901.1
Ensembl Acc Id: ENSRNOP00000070901   ⟸   ENSRNOT00000089027
RefSeq Acc Id: XP_038956056   ⟸   XM_039100128
- UniProtKB: M0R757 (UniProtKB/TrEMBL),   A0A8L2Q996 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000070777   ⟸   ENSRNOT00000085224
tr-type G

Name Modeler Protein Id AA Range Protein Structure
AF-M0R757-F1-model_v2 AlphaFold M0R757 1-462 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13702034
Promoter ID:EPDNEW_R12555
Type:multiple initiation site
Name:LOC100911991_1
Description:elongation factor 1-alpha 1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X153,491,808 - 153,491,868EPDNEW


1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-735 BioCyc
Ensembl Genes ENSRNOG00000011624 UniProtKB/TrEMBL
  ENSRNOG00000051885 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000056855 Ensembl
Ensembl Transcript ENSRNOT00000016947.5 UniProtKB/TrEMBL
  ENSRNOT00000089027 ENTREZGENE
  ENSRNOT00000089027.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro EF_GTP-bd_dom UniProtKB/TrEMBL
  G_TR_CS UniProtKB/TrEMBL
  GTP-eEF1A_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  TRAFAC_GTPase_members UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
  Transl_elong_EF1A_euk/arc UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_2 UniProtKB/TrEMBL
  Transl_elong_init/rib_B-barrel UniProtKB/TrEMBL
NCBI Gene 100360413 ENTREZGENE
PANTHER TRANSLATION FACTOR UniProtKB/TrEMBL
Pfam GTP-eEF1A_C UniProtKB/TrEMBL
  GTP_EFTU UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/TrEMBL
PhenoGen Eef1a1l1 PhenoGen
PRINTS ELONGATNFCT UniProtKB/TrEMBL
PROSITE EFACTOR_GTP UniProtKB/TrEMBL
  G_TR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011624 RatGTEx
  ENSRNOG00000051885 RatGTEx
  ENSRNOG00000056855 RatGTEx
Superfamily-SCOP Elong_init_C UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  Translat_factor UniProtKB/TrEMBL
UniProt A0A8L2Q996 ENTREZGENE, UniProtKB/TrEMBL
  M0R757 ENTREZGENE, UniProtKB/TrEMBL
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Eef1a1l1  eukaryotic translation elongation factor 1 alpha 1 like 1  LOC100360413  eukaryotic translation elongation factor 1 alpha 1-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100360413  eukaryotic translation elongation factor 1 alpha 1-like  LOC100911991  elongation factor 1-alpha 1-like  Data merged from RGD:6489209 737654 PROVISIONAL
2012-07-05 LOC100911991  elongation factor 1-alpha 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100360413  eukaryotic translation elongation factor 1 alpha 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL