Neto1 (neuropilin and tolloid like 1) - Rat Genome Database

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Gene: Neto1 (neuropilin and tolloid like 1) Rattus norvegicus
Analyze
Symbol: Neto1
Name: neuropilin and tolloid like 1
RGD ID: 1566269
Description: Predicted to enable ionotropic glutamate receptor binding activity. Predicted to be involved in learning or memory; modulation of chemical synaptic transmission; and protein localization to synapse. Predicted to act upstream of or within receptor localization to synapse. Predicted to be located in excitatory synapse. Predicted to be active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and postsynaptic density membrane. Orthologous to human NETO1 (neuropilin and tolloid like 1); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC307206; neuropilin (NRP) and tolloid (TLL)-like 1; neuropilin and tolloid-like protein 1; RGD1566269; similar to Neuropilin- and tolloid-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81881,905,455 - 82,028,730 (+)NCBIGRCr8
mRatBN7.21879,635,633 - 79,753,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1879,635,633 - 79,749,030 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1881,744,847 - 81,859,798 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01882,416,897 - 82,531,858 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01880,252,532 - 80,367,485 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01883,471,342 - 83,585,043 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1883,471,342 - 83,584,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01882,532,693 - 82,646,402 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41882,888,369 - 83,107,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1878,220,855 - 78,334,439 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neto1Ratchromosome 18q deletion syndrome  ISONETO1 (Homo sapiens)8554872ClinVar Annotator: match by term: Monosomy 18q and deletion 18qClinVarPMID:25741868 and PMID:31690835
Neto1Ratintestinal volvulus  ISONETO1 (Homo sapiens)8554872ClinVar Annotator: match by term: INTESTINAL MALROTATION and FAMILIALClinVarPMID:25741868
Neto1RatNeurodevelopmental Disorders  ISONETO1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Neto1Ratpulmonary valve stenosis  ISONETO1 (Homo sapiens)8554872ClinVar Annotator: match by term: Pulmonary valve stenosisClinVarPMID:25741868
Neto1RatVolvulus Of Midgut  ISONETO1 (Homo sapiens)8554872ClinVar Annotator: match by term: Volvulus of midgutClinVarPMID:25741868

1 to 20 of 63 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neto1Rat1,1,1-trichloroethane decreases expressionISONeto1 (Mus musculus)64804641 more ...CTDPMID:25270620
Neto1Rat1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of NETO1 mRNACTDPMID:27840820
Neto1Rat17beta-estradiol affects expressionISONETO1 (Homo sapiens)6480464Estradiol affects the expression of NETO1 mRNACTDPMID:22574217
Neto1Rat17beta-estradiol multiple interactionsISONETO1 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of NETO1 mRNACTDPMID:30165855
Neto1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONeto1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NETO1 mRNACTDPMID:24680724
Neto1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NETO1 mRNACTDPMID:32109520
Neto1Rat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:32109520
Neto1Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISONETO1 (Homo sapiens)64804642 more ...CTDPMID:26705709
Neto1Rat2-palmitoylglycerol increases expressionISONETO1 (Homo sapiens)64804642-palmitoylglycerol results in increased expression of NETO1 mRNACTDPMID:37199045
Neto1Rat4,4'-sulfonyldiphenol increases expressionISONeto1 (Mus musculus)6480464bisphenol S results in increased expression of NETO1 mRNACTDPMID:30951980 and PMID:39298647
Neto1Rat5-aza-2'-deoxycytidine increases expressionISONETO1 (Homo sapiens)6480464Decitabine results in increased expression of NETO1 mRNACTDPMID:21856257
Neto1Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of NETO1 mRNACTDPMID:24780913
Neto1Rataflatoxin B1 decreases methylationISONETO1 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of NETO1 gene and Aflatoxin B1 results in decreased methylation of NETO1 intronCTDPMID:27153756 and PMID:30157460
Neto1RatAflatoxin B2 alpha increases methylationISONETO1 (Homo sapiens)6480464aflatoxin B2 results in increased methylation of NETO1 intronCTDPMID:30157460
Neto1Ratall-trans-retinoic acid increases expressionISONETO1 (Homo sapiens)6480464Tretinoin results in increased expression of NETO1 mRNACTDPMID:21934132
Neto1Ratarsane multiple interactionsISONETO1 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of NETO1 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of NETO1 mRNACTDPMID:39836092
Neto1Ratarsenic atom multiple interactionsISONETO1 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of NETO1 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of NETO1 mRNACTDPMID:39836092
Neto1Ratarsenite(3-) increases methylationISONETO1 (Homo sapiens)6480464arsenite results in increased methylation of NETO1 promoterCTDPMID:23974009
Neto1Ratbenzo[a]pyrene affects methylationISONETO1 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of NETO1 intronCTDPMID:30157460
Neto1Ratbenzo[a]pyrene increases methylationISONETO1 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of NETO1 promoterCTDPMID:27901495

1 to 20 of 63 rows

Biological Process
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neto1Ratanterograde axonal transport of neurotransmitter receptor complex involved_inISONeto1 (Mus musculus)1624291 PMID:28680963RGDPMID:28680963
Neto1Ratanterograde axonal transport of neurotransmitter receptor complex involved_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratmemory involved_inISONeto1 (Mus musculus)1624291 PMID:19243221RGDPMID:19243221
Neto1Ratmemory involved_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratneurotransmitter receptor localization to postsynaptic specialization membrane involved_inISONeto1 (Mus musculus)1624291 PMID:26720915RGDPMID:26720915
Neto1Ratneurotransmitter receptor localization to postsynaptic specialization membrane involved_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratpositive regulation of excitatory postsynaptic potential involved_inIBAMGI:2180216 and PANTHER:PTN0029014941600115GO_REF:0000033GO_CentralGO_REF:0000033
Neto1Ratpositive regulation of excitatory postsynaptic potential acts_upstream_of_or_withinIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratpositive regulation of excitatory postsynaptic potential acts_upstream_of_or_withinISONeto1 (Mus musculus)1624291MGI:3836584 PMID:21734292RGDPMID:21734292
Neto1Ratreceptor localization to synapse acts_upstream_of_or_withinIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratreceptor localization to synapse acts_upstream_of_or_withinISONeto1 (Mus musculus)1624291MGI:3836584 PMID:21734292RGDPMID:21734292
Neto1Ratregulation of long-term neuronal synaptic plasticity involved_inISONeto1 (Mus musculus)1624291 PMID:19243221RGDPMID:19243221
Neto1Ratregulation of long-term neuronal synaptic plasticity involved_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratregulation of postsynaptic neurotransmitter receptor activity involved_inISONeto1 (Mus musculus)1624291 PMID:26720915RGDPMID:26720915
Neto1Ratvisual learning involved_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratvisual learning involved_inISONeto1 (Mus musculus)1624291 PMID:19243221RGDPMID:19243221
1 to 16 of 16 rows

Cellular Component
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neto1Rataxon cytoplasm located_inIEAGO:01402311600115GO_REF:0000108GOCGO_REF:0000108
Neto1Ratexcitatory synapse located_inISONeto1 (Mus musculus)1624291 PMID:19243221RGDPMID:19243221
Neto1Ratexcitatory synapse located_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratglutamatergic synapse is_active_inISONeto1 (Mus musculus)1624291 PMID:19243221 and PMID:26720915RGDPMID:19243221 and PMID:26720915
Neto1Ratglutamatergic synapse is_active_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratpostsynaptic density located_inISONeto1 (Mus musculus)1624291 PMID:19243221 and PMID:21734292RGDPMID:19243221 and PMID:21734292
Neto1Ratpostsynaptic density located_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratpostsynaptic density is_active_inIBAMGI:1921763 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Neto1Ratpostsynaptic density membrane is_active_inISONeto1 (Mus musculus)1624291 PMID:19243221RGDPMID:19243221
Neto1Ratpostsynaptic density membrane is_active_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1RatSchaffer collateral - CA1 synapse is_active_inISONeto1 (Mus musculus)1624291 PMID:28680963RGDPMID:28680963
Neto1RatSchaffer collateral - CA1 synapse is_active_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
Neto1Ratsynapse located_inISONeto1 (Mus musculus)1624291 PMID:21734292RGDPMID:21734292
Neto1Ratsynapse located_inIEAUniProtKB:Q8R4I7 and ensembl:ENSMUSP000000573401600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 14 of 14 rows

Molecular Function

  


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:19243221   PMID:21734292   PMID:23621516   PMID:26277340   PMID:30421168  



Neto1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81881,905,455 - 82,028,730 (+)NCBIGRCr8
mRatBN7.21879,635,633 - 79,753,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1879,635,633 - 79,749,030 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1881,744,847 - 81,859,798 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01882,416,897 - 82,531,858 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01880,252,532 - 80,367,485 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01883,471,342 - 83,585,043 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1883,471,342 - 83,584,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01882,532,693 - 82,646,402 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41882,888,369 - 83,107,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1878,220,855 - 78,334,439 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
NETO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381872,742,314 - 72,867,987 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1872,742,314 - 72,868,146 (-)EnsemblGRCh38hg38GRCh38
GRCh371870,409,549 - 70,535,222 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361868,565,767 - 68,685,790 (-)NCBINCBI36Build 36hg18NCBI36
Build 341868,565,766 - 68,683,914NCBI
Celera1867,266,714 - 67,386,741 (-)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1867,129,054 - 67,254,266 (-)NCBIHuRef
CHM1_11870,404,789 - 70,530,029 (-)NCBICHM1_1
T2T-CHM13v2.01872,963,774 - 73,089,445 (-)NCBIT2T-CHM13v2.0
Neto1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391886,411,110 - 86,524,482 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1886,413,077 - 86,524,843 (+)EnsemblGRCm39 Ensembl
GRCm381886,394,815 - 86,506,721 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1886,394,952 - 86,506,718 (+)EnsemblGRCm38mm10GRCm38
MGSCv371886,564,344 - 86,671,289 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361886,529,145 - 86,635,466 (+)NCBIMGSCv36mm8
Celera1887,432,805 - 87,540,028 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1858.47NCBI
Neto1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540256,262,137 - 56,376,142 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540256,262,137 - 56,376,105 (-)NCBIChiLan1.0ChiLan1.0
NETO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21790,262,474 - 90,387,572 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11875,955,097 - 76,080,195 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01866,114,425 - 66,240,141 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11869,402,193 - 69,527,333 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1869,408,116 - 69,527,333 (-)Ensemblpanpan1.1panPan2
NETO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.116,114,152 - 6,242,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl16,114,067 - 6,225,821 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha17,125,478 - 7,252,116 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.015,929,615 - 6,056,608 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl15,929,703 - 6,044,453 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115,967,271 - 6,093,806 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.015,921,208 - 6,048,154 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.016,139,656 - 6,266,730 (+)NCBIUU_Cfam_GSD_1.0
Neto1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494419,972,680 - 20,078,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936756296,578 - 401,823 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936756296,584 - 403,830 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NETO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1150,711,628 - 150,817,437 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11150,711,486 - 150,821,626 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21167,021,548 - 167,061,940 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NETO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1186,956,629 - 7,082,135 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl186,957,091 - 7,076,892 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606018,776,177 - 18,902,102 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Neto1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248068,014,353 - 8,127,078 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248068,013,955 - 8,128,867 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Neto1
667 total Variants

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:102
Interacting mature miRNAs:134
Transcripts:ENSRNOT00000019384
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
6903353Bp353Blood pressure QTL 3532.8arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)185979647883828827Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat

1 to 10 of 20 rows
D18Mit6  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81881,806,709 - 81,806,852 (+)Marker Load Pipeline
mRatBN7.21879,531,886 - 79,532,029 (+)MAPPERmRatBN7.2
Rnor_6.01883,366,257 - 83,366,399NCBIRnor6.0
Rnor_5.01882,427,608 - 82,427,750UniSTSRnor5.0
RGSC_v3.41882,920,379 - 82,920,522RGDRGSC3.4
RGSC_v3.41882,920,380 - 82,920,522UniSTSRGSC3.4
RGSC_v3.11882,993,830 - 82,993,972RGD
Celera1878,116,960 - 78,117,102UniSTS
RH 3.4 Map18768.3RGD
RH 3.4 Map18768.3UniSTS
SHRSP x BN Map1851.2799UniSTS
SHRSP x BN Map1851.2799RGD
Cytogenetic Map18q13UniSTS
D18Got77  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21879,683,569 - 79,683,854 (+)MAPPERmRatBN7.2
Rnor_6.01883,518,834 - 83,519,118NCBIRnor6.0
Rnor_5.01882,580,185 - 82,580,469UniSTSRnor5.0
RGSC_v3.41883,042,103 - 83,042,388RGDRGSC3.4
RGSC_v3.41883,042,104 - 83,042,388UniSTSRGSC3.4
RGSC_v3.11883,115,554 - 83,115,838RGD
Celera1878,269,014 - 78,269,298UniSTS
RH 3.4 Map18768.2RGD
RH 3.4 Map18768.2UniSTS
Cytogenetic Map18q13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 7 38 107 58 62 37 12 37 6 149 64 93 32 59 25



Ensembl Acc Id: ENSRNOT00000019384   ⟹   ENSRNOP00000019384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1879,635,633 - 79,749,030 (+)Ensembl
Rnor_6.0 Ensembl1883,471,342 - 83,584,357 (+)Ensembl
RefSeq Acc Id: NM_001107371   ⟹   NP_001100841
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,910,453 - 82,023,847 (+)NCBI
mRatBN7.21879,635,633 - 79,749,030 (+)NCBI
Rnor_6.01883,471,342 - 83,584,357 (+)NCBI
Rnor_5.01882,532,693 - 82,646,402 (+)NCBI
RGSC_v3.41882,888,369 - 83,107,662 (+)RGD
Celera1878,220,855 - 78,334,439 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255035   ⟹   XP_006255097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,905,455 - 82,028,730 (+)NCBI
mRatBN7.21879,636,453 - 79,753,913 (+)NCBI
Rnor_6.01883,472,212 - 83,585,043 (+)NCBI
Rnor_5.01882,532,693 - 82,646,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772133   ⟹   XP_008770355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,905,455 - 81,987,177 (+)NCBI
mRatBN7.21879,636,453 - 79,712,356 (+)NCBI
Rnor_6.01883,472,212 - 83,548,275 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096765   ⟹   XP_038952693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,905,455 - 82,028,730 (+)NCBI
mRatBN7.21879,636,453 - 79,753,913 (+)NCBI
RefSeq Acc Id: XM_039096766   ⟹   XP_038952694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,905,455 - 82,028,730 (+)NCBI
mRatBN7.21879,636,453 - 79,753,913 (+)NCBI
RefSeq Acc Id: XM_039096767   ⟹   XP_038952695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,919,787 - 82,028,730 (+)NCBI
mRatBN7.21879,644,967 - 79,753,913 (+)NCBI
RefSeq Acc Id: XM_039096768   ⟹   XP_038952696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,919,692 - 82,028,730 (+)NCBI
mRatBN7.21879,644,863 - 79,753,913 (+)NCBI
RefSeq Acc Id: XM_039096769   ⟹   XP_038952697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,905,455 - 81,996,287 (+)NCBI
mRatBN7.21879,636,453 - 79,721,472 (+)NCBI
RefSeq Acc Id: XM_063277287   ⟹   XP_063133357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,905,455 - 82,028,730 (+)NCBI
RefSeq Acc Id: XM_063277288   ⟹   XP_063133358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,905,455 - 82,016,979 (+)NCBI
RefSeq Acc Id: XR_005496025
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81881,905,455 - 81,996,136 (+)NCBI
mRatBN7.21879,636,453 - 79,721,319 (+)NCBI
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: NP_001100841   ⟸   NM_001107371
- Peptide Label: precursor
- UniProtKB: D4AAD6 (UniProtKB/TrEMBL),   A6K5M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255097   ⟸   XM_006255035
- Peptide Label: isoform X1
- UniProtKB: D4AAD6 (UniProtKB/TrEMBL),   A6K5M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770355   ⟸   XM_008772133
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSRNOP00000019384   ⟸   ENSRNOT00000019384
RefSeq Acc Id: XP_038952693   ⟸   XM_039096765
- Peptide Label: isoform X1
- UniProtKB: D4AAD6 (UniProtKB/TrEMBL),   A6K5M8 (UniProtKB/TrEMBL)
CUB

Name Modeler Protein Id AA Range Protein Structure
AF-D4AAD6-F1-model_v2 AlphaFold D4AAD6 1-533 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-6735 BioCyc
Ensembl Genes ENSRNOG00000014006 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019384 ENTREZGENE
  ENSRNOT00000019384.5 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.620 UniProtKB/TrEMBL
  2.60.120.290 UniProtKB/TrEMBL
InterPro CUB UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDLR_classA_rpt UniProtKB/TrEMBL
  sperma_CUB_dom UniProtKB/TrEMBL
KEGG Report rno:307206 UniProtKB/TrEMBL
NCBI Gene 307206 ENTREZGENE
PANTHER NEUROPILIN AND TOLLOID-LIKE PROTEIN 1 UniProtKB/TrEMBL
  OVOCHYMASE-RELATED UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
PhenoGen Neto1 PhenoGen
PROSITE CUB UniProtKB/TrEMBL
  LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014006 RatGTEx
SMART CUB UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
Superfamily-SCOP CUB UniProtKB/TrEMBL
  LDL_rcpt_classA_cys-rich UniProtKB/TrEMBL
UniProt A6K5M8 ENTREZGENE, UniProtKB/TrEMBL
  D4AAD6 ENTREZGENE, UniProtKB/TrEMBL
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-10 Neto1  neuropilin and tolloid like 1  Neto1  neuropilin (NRP) and tolloid (TLL)-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Neto1  neuropilin (NRP) and tolloid (TLL)-like 1  RGD1566269_predicted  similar to Neuropilin- and tolloid-like protein 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1566269_predicted  similar to Neuropilin- and tolloid-like protein 1 (predicted)  LOC307206  similar to Neuropilin- and tolloid-like protein 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307206  similar to Neuropilin- and tolloid-like protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL