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Gene: Cacfd1 (calcium channel flower domain containing 1) Rattus norvegicus

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Symbol:

Cacfd1

Name:

calcium channel flower domain containing 1

RGD ID:

1311501

Description:

Predicted to be involved in vesicle-mediated transport. Predicted to be located in Golgi apparatus; plasma membrane; and synaptic vesicle. Orthologous to human CACFD1 (calcium channel flower domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

calcium channel flower domain-containing protein 1; calcium channel flower homolog; Fwe; Fwe2; hypothetical protein LOC296599; LOC296599; RGD1311501; similar to chromosome 9 open reading frame 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	30,733,958 - 30,750,237 (+)	NCBI		GRCr8
mRatBN7.2	3	10,335,881 - 10,352,437 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	10,335,881 - 10,343,406 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	13,395,897 - 13,406,703 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	21,981,298 - 21,992,104 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	20,236,599 - 20,247,405 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	5,555,807 - 5,571,205 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	5,555,807 - 5,572,064 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	10,917,547 - 10,932,900 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	5,905,478 - 5,916,284 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	5,908,674 - 5,917,132 (+)	NCBI
Celera	3	5,133,913 - 5,144,719 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cacfd1	Rat	developmental and epileptic encephalopathy 14		ISO	CACFD1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 14	ClinVar	PMID:28492532
Cacfd1	Rat	Ehlers-Danlos syndrome classic type 1		ISO	CACFD1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome and classic type	ClinVar	PMID:28492532
Cacfd1	Rat	Kleefstra syndrome 1		ISO	CACFD1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Kleefstra syndrome 1	ClinVar	PMID:22318994 more ...
Cacfd1	Rat	Leigh disease		ISO	CACFD1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Leigh syndrome	ClinVar	PMID:28492532
Cacfd1	Rat	primary coenzyme Q10 deficiency 7		ISO	CACFD1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome	ClinVar	PMID:28492532
Cacfd1	Rat	Rafiq syndrome		ISO	CACFD1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Rafiq syndrome	ClinVar	PMID:28492532
Cacfd1	Rat	tuberous sclerosis 1		ISO	CACFD1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Tuberous sclerosis 1	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cacfd1	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Cacfd1 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CACFD1 mRNA	CTD	PMID:22206623
Cacfd1	Rat	17beta-estradiol	increases expression	ISO	Cacfd1 (Mus musculus)	6480464	Estradiol results in increased expression of CACFD1 mRNA	CTD	PMID:39298647
Cacfd1	Rat	17beta-estradiol	decreases expression	ISO	CACFD1 (Homo sapiens)	6480464	Estradiol results in decreased expression of CACFD1 mRNA	CTD	PMID:31614463
Cacfd1	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Cacfd1 (Mus musculus)	6480464	[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of CACFD1 mRNA	CTD	PMID:25975270
Cacfd1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of CACFD1 mRNA	CTD	PMID:33387578
Cacfd1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Cacfd1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of CACFD1 mRNA	CTD	PMID:28922406
Cacfd1	Rat	acrylamide	affects expression	EXP		6480464	Acrylamide affects the expression of CACFD1 mRNA	CTD	PMID:28959563
Cacfd1	Rat	acrylamide	increases expression	ISO	CACFD1 (Homo sapiens)	6480464	Acrylamide results in increased expression of CACFD1 mRNA	CTD	PMID:32763439
Cacfd1	Rat	arsane	multiple interactions	ISO	CACFD1 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of CACFD1 mRNA	CTD	PMID:39836092
Cacfd1	Rat	arsenic atom	multiple interactions	ISO	CACFD1 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of CACFD1 mRNA	CTD	PMID:39836092
Cacfd1	Rat	benzo[a]pyrene	increases methylation	ISO	CACFD1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of CACFD1 3' UTR	CTD	PMID:27901495
Cacfd1	Rat	benzo[a]pyrene	decreases expression	ISO	CACFD1 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of CACFD1 mRNA	CTD	PMID:32234424
Cacfd1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of CACFD1 mRNA	CTD	PMID:25181051
Cacfd1	Rat	butanal	decreases expression	ISO	CACFD1 (Homo sapiens)	6480464	butyraldehyde results in decreased expression of CACFD1 mRNA	CTD	PMID:26079696
Cacfd1	Rat	cadmium dichloride	increases methylation	EXP		6480464	Cadmium Chloride results in increased methylation of CACFD1 promoter	CTD	PMID:22457795
Cacfd1	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of CACFD1 mRNA	CTD	PMID:33453195
Cacfd1	Rat	carbon nanotube	increases expression	ISO	Cacfd1 (Mus musculus)	6480464	Nanotubes and Carbon results in increased expression of CACFD1 mRNA	CTD	PMID:25554681 and PMID:25620056
Cacfd1	Rat	cisplatin	decreases expression	ISO	CACFD1 (Homo sapiens)	6480464	Cisplatin results in decreased expression of CACFD1 mRNA	CTD	PMID:27392435
Cacfd1	Rat	clofibrate	decreases expression	ISO	Cacfd1 (Mus musculus)	6480464	Clofibrate results in decreased expression of CACFD1 mRNA	CTD	PMID:23811191
Cacfd1	Rat	DDE	decreases expression	ISO	CACFD1 (Homo sapiens)	6480464	Dichlorodiphenyl Dichloroethylene results in decreased expression of CACFD1 mRNA	CTD	PMID:38568856
Cacfd1	Rat	doxorubicin	affects expression	ISO	CACFD1 (Homo sapiens)	6480464	Doxorubicin affects the expression of CACFD1 mRNA	CTD	PMID:29803840
Cacfd1	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of CACFD1 mRNA	CTD	PMID:29391264
Cacfd1	Rat	folic acid	multiple interactions	ISO	Cacfd1 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CACFD1 mRNA	CTD	PMID:22206623
Cacfd1	Rat	gallic acid	decreases expression	ISO	CACFD1 (Homo sapiens)	6480464	Gallic Acid results in decreased expression of CACFD1 mRNA	CTD	PMID:34408198
Cacfd1	Rat	lipopolysaccharide	decreases expression	ISO	CACFD1 (Homo sapiens)	6480464	Lipopolysaccharides results in decreased expression of CACFD1 mRNA	CTD	PMID:35811015
Cacfd1	Rat	lipopolysaccharide	multiple interactions	ISO	CACFD1 (Homo sapiens)	6480464	[S-(1 more ...	CTD	PMID:35811015
Cacfd1	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of CACFD1 mRNA	CTD	PMID:33387578
Cacfd1	Rat	perfluorooctanoic acid	multiple interactions	ISO	CACFD1 (Homo sapiens)	6480464	[Plasticizers co-treated with Cosmetics co-treated with Flame Retardants co-treated with perfluorooctanoic acid co-treated with Phytoestrogens] results in increased expression of CACFD1 mRNA	CTD	PMID:33325755
Cacfd1	Rat	phytoestrogen	multiple interactions	ISO	CACFD1 (Homo sapiens)	6480464	[Plasticizers co-treated with Cosmetics co-treated with Flame Retardants co-treated with perfluorooctanoic acid co-treated with Phytoestrogens] results in increased expression of CACFD1 mRNA	CTD	PMID:33325755
Cacfd1	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	CACFD1 (Homo sapiens)	6480464	[S-(1 more ...	CTD	PMID:35811015
Cacfd1	Rat	sodium arsenite	increases expression	ISO	CACFD1 (Homo sapiens)	6480464	sodium arsenite results in increased expression of CACFD1 mRNA	CTD	PMID:38568856
Cacfd1	Rat	sodium arsenite	multiple interactions	ISO	CACFD1 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of CACFD1 mRNA	CTD	PMID:39836092
Cacfd1	Rat	tetrachloromethane	decreases expression	EXP		6480464	Carbon Tetrachloride results in decreased expression of CACFD1 mRNA	CTD	PMID:33387578
Cacfd1	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of CACFD1 mRNA	CTD	PMID:34492290
Cacfd1	Rat	tremolite asbestos	increases expression	ISO	Cacfd1 (Mus musculus)	6480464	tremolite results in increased expression of CACFD1 mRNA	CTD	PMID:29279043
Cacfd1	Rat	triphenyl phosphate	affects expression	ISO	CACFD1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of CACFD1 mRNA	CTD	PMID:37042841
Cacfd1	Rat	triptonide	increases expression	ISO	Cacfd1 (Mus musculus)	6480464	triptonide results in increased expression of CACFD1 mRNA	CTD	PMID:33045310
Cacfd1	Rat	urethane	increases expression	ISO	CACFD1 (Homo sapiens)	6480464	Urethane results in increased expression of CACFD1 mRNA	CTD	PMID:28818685
Cacfd1	Rat	valproic acid	increases methylation	ISO	CACFD1 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of CACFD1 gene	CTD	PMID:29154799
Cacfd1	Rat	valproic acid	decreases expression	ISO	CACFD1 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of CACFD1 mRNA	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cacfd1	Rat	vesicle-mediated transport	involved_in	IBA	FB:FBgn0261722 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cacfd1	Rat	cytoplasmic vesicle	located_in	IEA	UniProtKB-KW:KW-0968	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cacfd1	Rat	endomembrane system	located_in	IEA	UniProtKB-SubCell:SL-0147	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Cacfd1	Rat	Golgi apparatus	located_in	IEA	UniProtKB-SubCell:SL-0132	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Cacfd1	Rat	Golgi apparatus	located_in	IEA	UniProtKB-KW:KW-0333	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cacfd1	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cacfd1	Rat	membrane	located_in	IEA	InterPro:IPR019365	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Cacfd1	Rat	plasma membrane	located_in	IEA	UniProtKB-SubCell:SL-0039	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Cacfd1	Rat	plasma membrane	located_in	IEA	UniProtKB-KW:KW-1003	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cacfd1	Rat	synapse	located_in	IEA	UniProtKB-KW:KW-0770	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cacfd1	Rat	synaptic vesicle	located_in	IEA	UniProtKB-SubCell:SL-0259	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Cacfd1	Rat	vesicle	located_in	IEA	UniProtKB-SubCell:SL-0498	1600115	GO_REF:0000044	UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cacfd1	Rat	protein binding	enables	ISO	CACFD1 (Homo sapiens)	1624291	UniProtKB:Q8N0V3 more ...	RGD	PMID:21516116 more ...

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:28414717

Cacfd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	30,733,958 - 30,750,237 (+)	NCBI		GRCr8
mRatBN7.2	3	10,335,881 - 10,352,437 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	10,335,881 - 10,343,406 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	13,395,897 - 13,406,703 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	21,981,298 - 21,992,104 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	20,236,599 - 20,247,405 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	5,555,807 - 5,571,205 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	5,555,807 - 5,572,064 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	10,917,547 - 10,932,900 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	5,905,478 - 5,916,284 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	5,908,674 - 5,917,132 (+)	NCBI
Celera	3	5,133,913 - 5,144,719 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

CACFD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	133,459,978 - 133,470,848 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	133,459,965 - 133,470,848 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	136,325,100 - 136,335,970 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	135,314,952 - 135,325,706 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	133,354,684 - 133,365,439	NCBI
Celera	9	106,875,680 - 106,886,533 (+)	NCBI		Celera
Cytogenetic Map	9	q34.2	NCBI
HuRef	9	105,826,781 - 105,837,598 (+)	NCBI		HuRef
CHM1_1	9	136,475,590 - 136,486,412 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	145,674,420 - 145,685,255 (+)	NCBI		T2T-CHM13v2.0

Cacfd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	26,899,867 - 26,911,102 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	26,899,938 - 26,911,101 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	27,009,855 - 27,021,090 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	27,009,926 - 27,021,089 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	26,865,486 - 26,876,609 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	26,831,959 - 26,843,098 (+)	NCBI		MGSCv36	mm8
Celera	2	26,722,797 - 26,723,730 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	19.17	NCBI

Cacfd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	2,787,099 - 2,796,132 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	2,787,098 - 2,796,132 (+)	NCBI	ChiLan1.0	ChiLan1.0

CACFD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	5,882,653 - 5,893,642 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	5,884,989 - 5,895,983 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	104,582,983 - 104,593,960 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	133,194,490 - 133,205,686 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	133,194,490 - 133,205,686 (+)	Ensembl	panpan1.1		panPan2

CACFD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	49,868,218 - 49,878,254 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	49,148,870 - 49,159,388 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	50,741,637 - 50,752,154 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	50,741,595 - 50,752,149 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	49,503,703 - 49,514,206 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	49,845,445 - 49,855,955 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	49,923,585 - 49,934,115 (+)	NCBI		UU_Cfam_GSD_1.0

Cacfd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	199,926,387 - 199,934,113 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	3,441,018 - 3,448,669 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	3,439,174 - 3,448,637 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CACFD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	273,056,532 - 273,066,914 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	273,045,620 - 273,066,916 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	307,030,340 - 307,040,730 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CACFD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	4,665,927 - 4,676,671 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	4,668,013 - 4,676,571 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666058	312,533 - 323,324 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cacfd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	1,889,949 - 1,897,703 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	1,889,793 - 1,897,703 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cacfd1
56 total Variants

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
3	10351273	10351274	C	T	snv	ACI/EurMcwi (2019), European Variation Archive Release 6, European Variation Archive Release 4, European Variation Archive Release 3, DA/OlaHsd (2019NG), ACI/EurMcwi (2019NG), MR/N (2020), DA/OlaHsd (2019), ACI/N (2020), MR/NRrrc (2022)	View more Information
3	10351338	10351339	C	T	snv	European Variation Archive Release 4, ACI/EurMcwi (2019NG), European Variation Archive Release 6, MR/N (2020), ACI/EurMcwi (2019), DA/OlaHsd (2019), MR/NRrrc (2022), ACI/N (2020), DA/OlaHsd (2019NG), European Variation Archive Release 3	View more Information

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
3	5571199	5571200	C	T	snv	ACI/EurMcwi (MCW), ACI/N (MCW), ACI/EurMcwi (RGD), MR/N (2020), ACI/N (2020), DA/OlaHsd (2019), ACI/EurMcwi (2019)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	87
Count of miRNA genes:	74
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000007677
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat

BF414460

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	10,343,352 - 10,343,472 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	5,563,279 - 5,563,398	NCBI	Rnor6.0
Rnor_5.0	3	10,925,019 - 10,925,138	UniSTS	Rnor5.0
RGSC_v3.4	3	5,912,950 - 5,913,069	UniSTS	RGSC3.4
Celera	3	5,141,385 - 5,141,504	UniSTS
RH 3.4 Map	3	11.1	UniSTS
Cytogenetic Map	3	p12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001106561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007677 ⟹ ENSRNOP00000007677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	10,335,881 - 10,343,406 (+)	Ensembl
Rnor_6.0 Ensembl	3	5,555,807 - 5,566,613 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083078 ⟹ ENSRNOP00000072807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	5,558,680 - 5,572,064 (+)	Ensembl

RefSeq Acc Id:

NM_001106561 ⟹ NP_001100031

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	30,733,958 - 30,744,764 (+)	NCBI
mRatBN7.2	3	10,335,881 - 10,346,687 (+)	NCBI
Rnor_6.0	3	5,555,807 - 5,566,613 (+)	NCBI
Rnor_5.0	3	10,917,547 - 10,932,900 (+)	NCBI
RGSC_v3.4	3	5,905,478 - 5,916,284 (+)	RGD
Celera	3	5,133,913 - 5,144,719 (+)	RGD

Sequence:

show sequence

GGTGGTGGTGAGGCAGCATCGTGTGCTGCCGGGAGGTGGAGTGCTGCTACTGTACCGGAGCCAACCTGCCCCAGGGACCTTCTACAAAGAATGTGACAGGCAGCTCTTTGGACCTCGGGGTGAAATCA
CGAGTCCCTCACTGAGCCCAGACGGGAGGAAGGCAGGAACCTGCAGGGTCTTTGTCAGTGTGGCCCCACAGGCCCGAATTGCCATCCGTGCCCTGGCCAGTGACATGGGCACTGCTTCTGAGGGGACC
AGTGCCAACTATGTCTCGATCAGGGATATCCACGGTCTGAAGACTACAACATTTTGGGGGCAGCAGGTGCTCTACTGGGAGTCCGAAGGCAGTGAGGCTGAACTGGAGTTTAGCCATGGCTTCCTGGA
GGCGCATGCCAGTTTCCAGGGCCAGTATTGGACCATCCCACCGAGGACACCGGAACAGGTCAACAGCGTGGCTCTGTCCTAGATTTCTCTCCAACGGCCAGCTGGAAAGAGAGGCAGCCCTACTCCGG
AAAGGGTGACCATCCCCGGACTATGCAACTCTAGCCTCTTGAGAGGTTCAAATGCCTGCCAGCCGAAGGGAACCGCTTTTAGTGACCTTTTCCAGGTGCAGAAGGGCGGGGACTGGGAGTTGGAGATC
AGAAAAGCAATCCCAGTCCTCAGGGCTAATAAAGGATACAGGAAACCAGACTGGAGTTTTCCTCCCATAACTTGCTGCCCACAGCAAGCCTGGCTTGAAAGCTTATTTTACTGAAAGGCGTGGTTCCC
TGGAGGTCTGAACAGACCCTTTGCCACTTCTAGATGACCTCTTCCAATCTTGGGAAGAGAAAAGACCAGTCCAGACCCAGCGTACCTGTAAACACGCCCCTTCTCCGCCATTTCTCCCCGCCCCCGGC
TATGGCCTGCGGGTCCGCCCCTATGCTAATCACCGCCTCTCCCACAAGGCCGCGCGCGGGTGGACACGTCCCTTTGTGCGCGCCCGGTGCTGCGCGCAGCGTTCAGCATGAGCGGCTCGGTCGCCGCC
GGAGCGGCCGCCGGCCCAGTCCCGCCGGCGCAAGAGGAGGGCATGACATGGTGGTACCGGTGGCTGTGCCGCCTGGCGGGAGTGCTAGGGGCAGTGTCCTGTGCCATCTCTGGACTCTTCAACTGCGT
CACGATCCACCCTCTGAACATCGCAGCTGGGGTGTGGATGATCATGAACGCCTTTATCCTGTTGCTGTGTGAGGCCCCCTTCTGCTGCCAGTTTGTGGAGTTTGCAAACACAGTAGCTGAGAAGGTTG
ACCGGCTGCGCTCCTGGCAGAAGGCCGTCTTCTACTGCGGGATGGCCATCGTCCCCATCGTCATGAGCCTGACCCTGACTACACTGCTGGGCAACGCCATCGCCTTCGCCACGGGGGTGCTGTACGGA
CTGTCTGCCCTGGGCAAAAAGGGAGATGCCATTTCTTATGCTCGGATCCAGCAGCAGAGGCAGCAGGCGGATGAGGAGAAGCTGGCTGAGACATTCGAGGGGGAACTGTGAGGTGAGGCAGGGCGCCT
GTCCTCATTGCCTACTGCCACTGGGCTCTGTGAACTTGTAGAAGGCTGAGTGTCAGCTCTGCTGAACATCCTGGGACAGGAGTACCTGCAAGTCTCCATGCCTCCAGTCTGCCTGTGCCTACCCTGTT
CTGCGGACCTCCTGAGCCTGGAGCTCCTGCCCCACTAGTACTGAAGGCCTGGGCTGCGGGATATGGATGGGGTGAACTCACTCCTGTCAGCCTGTGGCACAGATGCTGTGCTGGTGACCCTTCCCAGG
CCTAAGAGCAGTGTCCCCTGAACACATCAGTCCTCAC

hide sequence

RefSeq Acc Id:

XM_006233756 ⟹ XP_006233818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	30,736,838 - 30,750,237 (+)	NCBI
mRatBN7.2	3	10,338,750 - 10,352,437 (+)	NCBI
Rnor_6.0	3	5,558,637 - 5,571,205 (+)	NCBI
Rnor_5.0	3	10,917,547 - 10,932,900 (+)	NCBI

Sequence:

show sequence

CCCACAAGGCCGCGCGCGGGTGGACACGTCCCTTTGTGCGCGCCCGGTGCTGCGCGCAGCGTTC
AGCATGAGCGGCTCGGTCGCCGCCGGAGCGGCCGCCGGCCCAGTCCCGCCGGCGCAAGAGGAGGGCATGACATGGTGGTACCGGTGGCTGTGCCGCCTGGCGGGAGTGCTAGGGGCAGTGTCCTGTGC
CATCTCTGGACTCTTCAACTGCGTCACGATCCACCCTCTGAACATCGCAGCTGGGGTGTGGATGATCATGAACGCCTTTATCCTGTTGCTGTGTGAGGCCCCCTTCTGCTGCCAGTTTGTGGAGTTTG
CAAACACAGTAGCTGAGAAGGTTGACCGGCTGCGCTCCTGGCAGAAGGCCGTCTTCTACTGCGGGATGGCCATCGTCCCCATCGTCATGAGCCTGACCCTGACTACACTGCTGGGCAACGCCATCGCC
TTCGCCACGGGGGTGCTGTACGGACTGTCTGCCCTGGGCAAAAAGGGAGATGCCATTTCTTATGCTCGGATCCAGCAGCAGAGGCAGCAGGCGGATGAGGAGAAGCTGGCTGAGACATTCGAGGGGGA
ACTGTGAGTCTAGGGACTCTGGGCAGTGCTGGCCGCCTGGGTTCTCACCAGCACCACGGACGTGCTGTCGAAGATGGTCTGTAGGTACACGAGGAT

hide sequence

RefSeq Acc Id:

XM_008761633 ⟹ XP_008759855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	30,736,838 - 30,746,194 (+)	NCBI
mRatBN7.2	3	10,338,750 - 10,347,990 (+)	NCBI
Rnor_6.0	3	5,558,635 - 5,568,037 (+)	NCBI

Sequence:

show sequence

CTCCCACAAGGCCGCGCGCGGGTGGACACGTCCCTTTGTGCGCGCCCGGTGCTGCGCGCAGCGTTCAGCATGAGCGGCTCGGTCGCCGCCGGAGCGGCCGCCGGCCCAGTCCCGCCGGCGCAAGAGGA
GGGCATGACATGGTGGTACCGGTGGCTGTGCCGCCTGGCGGGAGTGCTAGGGGCAGTGTCCTGTGCCATCTCTGGACTCTTCAACTGCGTCACGATCCACCCTCTGAACATCGCAGCTGGGGTGTGGA
TGATGATGGCCATCGTCCCCATCGTCATGAGCCTGACCCTGACTACACTGCTGGGCAACGCCATCGCCTTCGCCACGGGGGTGCTGTACGGACTGTCTGCCCTGGGCAAAAAGGGAGATGCCATTTCT
TATGCTCGGATCCAGCAGCAGAGGCAGCAGGCGGATGAGGAGAAGCTGGCTGAGACATTCGAGGGGGAACTGTGAGGTGAGGCAGGGCGCCTGTCCTCATTGCCTACTGCCACTGGGCTCTGTGAACT
TGTAGAAGGCTGAGTGTCAGCTCTGCTGAACATCCTGGGACAGGAGTACCTGCAAGTCTCCATGCCTCCAGTCTGCCTGTGCCTACCCTGTTCTGCGGACCTCCTGAGCCTGGAGCTCCTGCCCCACT
AGTACTGAAGGCCTGGGCTGCGGGATATGGATGGGGTGAACTCACTCCTGTCAGCCTGTGGCACAGATGCTGTGCTGGTGACCCTTCCCAGGCCTAAGAGCAGTGTCCCCTGAACACATCAGTCCTCA
CGAGAGGCTTCACCCAGGCTTCAGCCACTTCAGGTTTCATCCTTTTTAGGTCTAAGGGTGCAGGTAGTTAGGGCTTTAATTCTGCTCCATGAACCCATCCTTGGAGCAGAGGAAGAGTACAGCAGTGT
CTTGCGGCCAGCTCCTGCCACCAGGAGCAGGAGAGATGGCTGGTCATTTGAGAATCCACAGCACTCCCAGGATGCAGCTTCCTGGCCAGAAGAGCATCCTTGGCAGTGGCCAGAGGGCTGGTGGAAGT
TCCCTAGTGCTCAGTGCTAGGAAGTGTATGTGCGTGTCTGTCTACGGAGTGATGTGTGGGCATGTGTACTGCTGCTAGCCTGCACTGAGAACCTCCTCGTCGGGGATGGCAGATTCCTTAGTGGGCTT
AACCTCAGGTATTCTTCCCAACCTGCCCCTGGCAGCCTGTAGCCTTTGAAGAGCTGGGCAGAGACCAGATCAACCTCTCACACAGAGCTGGCCCCTTCTCAGGTACCAGACCACAGAGATAAGTCTGC
ATGGCTGGGGCAAGGAGAGCTGCTCTGCTGGAACACGGCTCCAGGGACATGCTCTGGCTTGTCCCCTAACCTTCCTCTTCACTGCTACCTTCCCACTGTCCTGTGACATTGGATTAGTGGCTGATTAG
GTGGGTCCTTGGCCACACTTGGTCGCCTGGCTGAAGAGGATGTGTAAGGTGCTGAGCCTGCCTTCCTCCTGCACTAGGCCTTGTCCATGGTACCCCATCCTGGAGTTGTCAAGTTTCTAGGGGATCTC
TAGCTCATCAGTGCCTGAGGCCAGGAGGAGTGGACATTCTATTTGGGATAGCAGCAGTTCTCCAGAGAACCTGGCCAAGCTGGACCCTAGACTGGCAGAAATGTCCTAGTGTAGCTGGCTTAGGAGGA
CCTGTGCCTTCACGGTTCATCAGAGGCGATTTTCCTTGAGCCAGGGATGGGTTTCAAGTACTCTGTGTATGTGTCGGGGCCTGTGCTCACAGTAAGACCTGTCTACCTCCCAGGAGGAGAAAAGGCCC
CACCTGCTCCTCTGGTTACTTGAATGGGCATGAGATGGGGCTAGTTCTGCCCAGGCCTCCCGCCTCTGGCAGTAGAAATCAAAGGCTACATGTAGAGTAAAATTGTACCTCACTGGGGAAATGCATTT
TGTGCTGGACAGGCATTGGGTGAGGTATAAAGGTAGAAGCCCCCAAACATAGAGCAGTGTGGGCGGTCAGTCACTTATGTCCTGAGGTTCTTGGCAGGTCCATGGCACAGTGACTCTAGAGCCCACTG
CTTTGCCTCTGAGCATGGGCACTGTCCAGCCCAGACTAGGCCCCATTCTTGTCTGTGTCTGGGTGTCTCCCTGTGGCTCCTTTTGCCACCCCCGGTTTGTTTGCCGACTGGATTACATTTTGGAGTAA
AGCAAATCTGTAGTTGG

hide sequence

RefSeq Acc Id:

XM_039104726 ⟹ XP_038960654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	30,736,838 - 30,742,862 (+)	NCBI
mRatBN7.2	3	10,338,750 - 10,344,773 (+)	NCBI


Protein RefSeqs	NP_001100031	(Get FASTA)	NCBI Sequence Viewer
	XP_006233818	(Get FASTA)	NCBI Sequence Viewer
	XP_008759855	(Get FASTA)	NCBI Sequence Viewer
	XP_038960654	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4A9I3	(Get FASTA)	NCBI Sequence Viewer
	EDL93448	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000109944

RefSeq Acc Id:	NP_001100031 ⟸ NM_001106561
- UniProtKB:	D4A9I3 (UniProtKB/Swiss-Prot), A6JTJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGSVAAGAAAGPVPPAQEEGMTWWYRWLCRLAGVLGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFILLLCEAPFCCQFVEFANTVAEKVDRLRSWQKAVFYCGMAIVPIVMSLTLTTLLGNAIAF ATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETFEGEL hide sequence

RefSeq Acc Id:	XP_006233818 ⟸ XM_006233756
- Peptide Label:	isoform X1
- UniProtKB:	D4A9I3 (UniProtKB/Swiss-Prot), A6JTJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGSVAAGAAAGPVPPAQEEGMTWWYRWLCRLAGVLGAVSCAISGLFNCVTIHPLNIAAGVWMI MNAFILLLCEAPFCCQFVEFANTVAEKVDRLRSWQKAVFYCGMAIVPIVMSLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETFEGEL hide sequence

RefSeq Acc Id:	XP_008759855 ⟸ XM_008761633
- Peptide Label:	isoform X3
- Sequence:	show sequence MSGSVAAGAAAGPVPPAQEEGMTWWYRWLCRLAGVLGAVSCAISGLFNCVTIHPLNIAAGVWMMMAIVPIVMSLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETFEGE L hide sequence

Ensembl Acc Id:

ENSRNOP00000072807 ⟸ ENSRNOT00000083078

Ensembl Acc Id:

ENSRNOP00000007677 ⟸ ENSRNOT00000007677

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9I3-F1-model_v2	AlphaFold	D4A9I3	1-171	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13691923

Promoter ID:

EPDNEW_R2446

Type:

initiation region

Name:

Cacfd1_1

Description:

calcium channel flower domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	5,558,666 - 5,558,726	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-50310	BioCyc
Ensembl Genes	ENSRNOG00000005840	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000155871	ENTREZGENE
InterPro	TVP18/Ca-channel_flower	UniProtKB/Swiss-Prot
KEGG Report	rno:296599	UniProtKB/Swiss-Prot
NCBI Gene	296599	ENTREZGENE
PANTHER	CALCIUM CHANNEL FLOWER HOMOLOG	UniProtKB/Swiss-Prot
	PTHR13314	UniProtKB/Swiss-Prot
Pfam	Cg6151-P	UniProtKB/Swiss-Prot
PhenoGen	Cacfd1	PhenoGen
RatGTEx	ENSRNOG00000005840	RatGTEx
SMART	Cg6151-P	UniProtKB/Swiss-Prot
UniProt	A0A8L2Q414	ENTREZGENE, UniProtKB/TrEMBL
	A6JTJ9	ENTREZGENE, UniProtKB/TrEMBL
	D4A9I3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Cacfd1	calcium channel flower domain containing 1	RGD1311501	similar to chromosome 9 open reading frame 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1311501	similar to chromosome 9 open reading frame 7	RGD1311501_predicted	similar to chromosome 9 open reading frame 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1311501_predicted	similar to chromosome 9 open reading frame 7 (predicted)	LOC296599_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296599_predicted	similar to chromosome 9 open reading frame 7 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar