Mir6900 (microRNA 6900) - Rat Genome Database

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Gene: Mir6900 (microRNA 6900) Mus musculus
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Symbol: Mir6900
Name: microRNA 6900
RGD ID: 9674724
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm27708; mmu-mir-6900
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39192,392,205 - 92,392,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl192,392,205 - 92,392,264 (-)EnsemblGRCm39 Ensembl
GRCm38192,464,483 - 92,464,542 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl192,464,483 - 92,464,542 (-)EnsemblGRCm38mm10GRCm38
Celera195,403,848 - 95,403,907 (-)NCBICelera
Cytogenetic Map1DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16381832   PMID:22955976  



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Variants in Mir6900
5 total Variants

Predicted Targets
Summary Value
Count of predictions:27744
Count of gene targets:11661
Count of transcripts:20642
Interacting mature miRNAs:mmu-miR-6900-3p, mmu-miR-6900-5p
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse

1 to 10 of 39 rows





RefSeq Transcripts NR_105865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000183483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl192,392,205 - 92,392,264 (-)Ensembl
GRCm38.p6 Ensembl192,464,483 - 92,464,542 (-)Ensembl
RefSeq Acc Id: NR_105865
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39192,392,205 - 92,392,264 (-)NCBI
GRCm38192,464,483 - 92,464,542 (-)NCBI
Celera195,403,848 - 95,403,907 (-)NCBI
Sequence:
RGD ID:6874498
Promoter ID:EPDNEW_M700
Type:single initiation site
Name:Mir6900_1
Description:Mus musculus microRNA 6900 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38192,464,454 - 92,464,514EPDNEW


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000098288 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000183483 ENTREZGENE
MGD MGI:5531090 ENTREZGENE
miRBase MI0022747 ENTREZGENE
NCBI Gene Mir6900 ENTREZGENE
PhenoGen Mir6900 PhenoGen
RNAcentral URS0000759F15 RNACentral
  URS000075DC32 RNACentral
  URS000075E331 RNACentral
1 to 9 of 9 rows