Gm31373 (predicted gene, 31373) - Rat Genome Database

Name: Gm31373
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Gm31373 (predicted gene, 31373) Mus musculus

Analyze

Symbol:

Gm31373

Name:

predicted gene, 31373

RGD ID:

9670361

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	190,724,868 - 190,726,682 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	190,719,753 - 190,736,001 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	190,992,671 - 190,994,485 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	190,992,692 - 190,994,677 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	1	197,915,910 - 197,926,066 (+)	NCBI		Celera
Cytogenetic Map	1	H6	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1301202	Yaa4_m	Y-linked autoimmune acceleration 4 (mouse)			Not determined		1	158468817	192468938	Mouse
4141245	Cq2_m	cholesterol QTL 2 (mouse)			Not determined		1	157456299	191456436	Mouse
1300823	Ath9_m	atherosclerosis 9 (mouse)			Not determined		1	160112768	194112883	Mouse
1558802	Skmw6_m	skeletal muscle weight 6 (mouse)			Not determined		1	167954584	195154279	Mouse
1301652	Cpfd2_m	cerebellum pattern fissures (mouse)			Not determined		1	172303451	195154279	Mouse
1300948	Fglu2_m	fasting glucose 2 (mouse)			Not determined		1	157456299	191456436	Mouse
1301339	Hdlq15_m	HDL QTL 15 (mouse)			Not determined		1	165873675	195154279	Mouse
12790987	Tgl5_m	triglyceride 5 (mouse)					1	160097157	194097157	Mouse
11059556	Lmr20b_m	leishmaniasis resistance 20b (mouse)					1	158468817	192468938	Mouse
11059557	Lmr20a_m	leishmaniasis resistance 20a (mouse)					1	158468817	192468938	Mouse
10043863	Swrl5_m	SWR lupus locus 5 (mouse)			Not determined		1	172303451	195154279	Mouse
11059558	Lmr20c_m	leishmaniasis resistance 20c (mouse)					1	158468817	192468938	Mouse
1301596	Elnt_m	escape latencies during navigation task (mouse)			Not determined		1	162145207	194111528	Mouse
11049575	Lmr8b_m	leishmaniasis resistance 8b (mouse)					1	172303451	195154279	Mouse
12790988	Phdlc5_m	plasma HDL cholesterol 5 (mouse)					9	160097157	194097157	Mouse
1301251	Scc3_m	colon tumor susceptibility 3 (mouse)			Not determined		1	168213823	195154279	Mouse
1301632	Bw8q1_m	body weight at 8 weeks QTL 1 (mouse)			Not determined		1	161201261	195154279	Mouse
1302023	Orch4_m	autoimmune orchitis resistance 4 (mouse)			Not determined		1	175211318	195154279	Mouse
4141483	Femwf7_m	femur work to failure 7 (mouse)			Not determined			167462514	195154279	Mouse
12792983	Liq1_m	limb inflammation QTL 1 (mouse)					1	167586086	191225397	Mouse
1300745	Gvhd1_m	graft-versus-host disease 1 (mouse)			Not determined		1	157456299	191456436	Mouse
10402498	Lmr20_m	leishmaniasis resistance 20 (mouse)			Not determined		1	158468817	192468938	Mouse
10412162	Nobq3_m	New Zealand obese QTL 3 (mouse)			Not determined		1	103933405	191225397	Mouse
1302158	Fembrs5_m	femur breaking strength 5 (mouse)			Not determined		1	167462514	195154279	Mouse
1301132	Mors1_m	modifier of obesity related sterility 1 (mouse)			Not determined		1	170379500	195154279	Mouse
1357620	Aaj1_m	anxiety in A/J 1 (mouse)			Not determined		1	180832317	191851043	Mouse
1301431	Pcho1_m	plasma cholesterol 1 (mouse)			Not determined		1	159262573	193262693	Mouse
1300727	Mptp1_m	MPTP sensitivity 1 (mouse)			Not determined		1	171632048	192681050	Mouse
1559024	Zit1_m	zinc induced tolerance 1 (mouse)			Not determined		1	167462514	195154279	Mouse
1357692	Axtq1_m	anxiety QTL 1 (mouse)			Not determined		1	180832317	191851043	Mouse
12880429	V25Dq1_m	vitamin D inactive form serum level QTL 1 (mouse)					1	172632197	195154279	Mouse
1301565	Mnotch_m	modifier of Notch (mouse)			Not determined		1	157456299	191456436	Mouse
12880426	V25Dq2_m	vitamin D inactive form serum level QTL 2 (mouse)					1	172532197	195154279	Mouse
1300732	Melm2_m	melanoma modifier 2 (mouse)			Not determined		1	157456299	191456436	Mouse
1357732	Tbbmd1_m	total body bone mineral density 1 (mouse)			Not determined		1	171983110	195154279	Mouse
1301602	Bslm4_m	basal locomotor activity 4 (mouse)			Not determined		1	157456299	191456436	Mouse
1301216	Cbm1_m	cerebellum weight 1 (mouse)			Not determined		1	157456299	191456436	Mouse
1300842	Sle9_m	systematic lupus erythematosus susceptibility 9 (mouse)			Not determined		1	158468817	192468938	Mouse
11532690	Sluc37_m	susceptibility to lung cancer 37 (mouse)					1	175468817	194111528	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_373864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_373865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC138229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000194403

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,719,753 - 190,726,874 (+)	Ensembl
GRCm38.p6 Ensembl	1	190,992,692 - 190,994,677 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317787

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,724,867 - 190,736,001 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317788

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,724,867 - 190,735,895 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317789

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,724,854 - 190,733,319 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317790

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,724,866 - 190,733,319 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317791

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,719,786 - 190,726,663 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317792

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,728,151 - 190,732,926 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317793

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,730,494 - 190,732,996 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317794

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,724,845 - 190,726,886 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317795

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,724,857 - 190,726,682 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317796

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,724,889 - 190,726,677 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317797

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,724,867 - 190,726,647 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317798

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,725,347 - 190,726,437 (+)	Ensembl

RefSeq Acc Id:

XR_373864

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	190,724,868 - 190,726,682 (+)	NCBI
GRCm38	1	190,992,671 - 190,994,485 (+)	NCBI

Sequence:

show sequence

GAGAGGCGGCCACATCCGGTCAGAGATGCTGTGGATGTGTTGAAGGTGGGGCAGATTCAGGTAC
AACAGGAGGACCACATGCTGTCACTGTCGATTTTCACTGGAGAGTCTGGACGCTCCAAGGTGGA
TACCTGCCCTGTCCTGATGGCCTGAGGAGAGGGACCTGGAAAGCAGTGTCTCTGAGGCATGCTG
CTCTGAAGACAACTCCACGTGACCACCTTTAAAGCACTCCCAACAGGCAGATGGCGAGACTCAG
CTCAAAGTCATACCCTCGTAAGAGACAAACAGTTATCCTAGGATCTAAAACCAAAGCTTGGAAT
CTACTCAAAATGTCACATGCTATTCTCTCTTCTTCTGAAGACGTCATCCAGTTGGGCCTGTCAA
TCACCTGGCCAGGAACCCACCTGCTCCTCCCCACACTACCTACCTGCTCCTCTCCACACTACCT
GCTCCTCCCCACACCAGGAAAGCTGATTGACCTGAAGCCATGCTAGGAGGATGGGCAGAATAAC
TATCCCTTTAATGAGTGTACTTTCTCTAGTCTTAATTCAGGAAATGTGACTCTT

hide sequence

RefSeq Acc Id:

XR_373865

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	190,724,958 - 190,726,682 (+)	NCBI
GRCm38	1	190,992,765 - 190,994,485 (+)	NCBI

Sequence:

show sequence

TTTTCCTTGTGGGCGTCGGGGGAAGTGTTTTGCTTCGTGTATTCATTCTAGCGCCAGGGGTACC
ACCCTCTTCAAGATGTGGCTCCGGAGGCAGCTCAAGTGGCGCATGGCTCTTGAGTCCAGTTTGC
ACTGCAGACCCTGGGAAAGGTACAACAGGAGGACCACATGCTGTCACTGTCGATTTTCACTGGA
GAGTCTGGACGCTCCAAGGTGGATACCTGCCCTGTCCTGATGGCCTGAGGAGAGGGACCTGGAA
AGCAGTGTCTCTGAGGCATGCTGCTCTGAAGACAACTCCACGTGACCACCTTTAAAGCACTCCC
AACAGGCAGATGGCGAGACTCAGCTCAAAGTCATACCCTCGTAAGAGACAAACAGTTATCCTAG
GATCTAAAACCAAAGCTTGGAATCTACTCAAAATGTCACATGCTATTCTCTCTTCTTCTGAAGA
CGTCATCCAGTTGGGCCTGTCAATCACCTGGCCAGGAACCCACCTGCTCCTCCCCACACTACCT
ACCTGCTCCTCTCCACACTACCTGCTCCTCCCCACACCAGGAAAGCTGATTGACCTGAAGCCAT
GCTAGGAGGATGGGCAGAATAACTATCCCTTTAATGAGTGTACTTTCTCTAGTCTTAATTCAGG
AAATGTGACTCTT

hide sequence

Promoters

RGD ID:

15092283

Promoter ID:

EPDNEWNC_M185

Type:

initiation region

Name:

Gm31373_1

Description:

predicted gene, 31373 [Source:MGI Symbol;Acc:MGI:5590532]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	190,992,692 - 190,992,752	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000104487	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000317795	ENTREZGENE
MGD	MGI:5590532	ENTREZGENE
NCBI Gene	Gm31373	ENTREZGENE
PhenoGen	Gm31373	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message